Naegleria gruberi: NAEGRDRAFT_55554
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Entry
NAEGRDRAFT_55554 CDS
T01241
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ngr
Naegleria gruberi
Pathway
ngr03013
Nucleocytoplasmic transport
ngr03015
mRNA surveillance pathway
ngr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NAEGRDRAFT_55554
09122 Translation
03013 Nucleocytoplasmic transport
NAEGRDRAFT_55554
03015 mRNA surveillance pathway
NAEGRDRAFT_55554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngr03019
]
NAEGRDRAFT_55554
03041 Spliceosome [BR:
ngr03041
]
NAEGRDRAFT_55554
Enzymes [BR:
ngr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NAEGRDRAFT_55554
Messenger RNA biogenesis [BR:
ngr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
NAEGRDRAFT_55554
Spliceosome [BR:
ngr03041
]
Complex C
Other components
EJC/TREX
NAEGRDRAFT_55554
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
NAEGRDRAFT_55554
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
PG_binding_2
Motif
Other DBs
NCBI-GeneID:
8863938
NCBI-ProteinID:
XP_002683122
JGI:
Naegr1_55554
UniProt:
D2UXZ1
LinkDB
All DBs
AA seq
441 aa
AA seq
DB search
MSTKHKKNDDDELADFDEDLQTKPTTASAGDKKAANSKGYSSVNSSGFRDFVLKPEILKA
IVDCGFEHPSEVQHECIPQAMIGSDVLCQAKSGMGKTAVFVISVLQQLETIEPKTMCVIL
CHARELAYQICQEFNRFSKYLPDVRVKSFIGGINIKTHIEQLKSETPHVVVGTPGRVLQL
AKDGHLKLGNVKYFIVDECDKVLESEEMRSDMQEIFKKTPKTKQVMMFSATLSTEMRLTA
KKFMNPSSLMEVKVDSDSKLTLHGLQQYFILLKEEEKNGKLLSWLDALEFNQVVIFVRTK
NRAEKLKDILEKNGFPCLTMHSDMSQDERLKQYQSFKNFEKRIMISTDLLGRGIDIQRVN
IVFNYDMPDEPDSYLHRVGRAGRFGTKGLAISFISSDMPSKIGSYERTINDQEVLENIQK
RFEVKIKEMPTQIDVGTYMTS
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgtccacaaagcataagaagaacgacgacgacgaattagctgattttgatgaagacttg
caaacaaaaccaacaacagcctctgctggtgataaaaaagccgctaatagcaagggatac
tcatcagtcaacagctctggcttcagagattttgttttgaaaccagaaattttgaaggcc
atagttgattgtggttttgaacatcctagtgaagtccaacacgaatgtattcctcaagct
atgattggaagtgatgtactttgccaagctaaatctggtatgggaaagacagctgtcttt
gtcatttctgttcttcaacaactcgaaactatcgaaccaaaaacaatgtgtgtcattctt
tgccatgccagagaattggcttatcaaatttgtcaagaatttaacagattctctaaatat
cttccagatgttagagtaaaatcttttattggaggtatcaatattaagactcacatcgaa
caattgaagagtgaaactcctcatgttgttgttggtactccaggtagagttttacaattg
gccaaagatggtcacttgaagctcggtaatgttaaatattttattgttgacgaatgcgac
aaggttttagagtcagaagaaatgagatccgatatgcaagagatctttaaaaagactcca
aagaccaagcaagtcatgatgttcagtgccaccctctccacagaaatgcgtttgactgcc
aagaagttcatgaatccaagttcactcatggaagttaaggttgacagtgactctaagctt
acacttcacggtcttcaacaatacttcattttgcttaaggaagaagaaaagaatggaaag
ttgttgagctggctagatgcattggaattcaatcaggttgttatctttgttagaactaag
aatagagcagaaaagctaaaggatatcttagaaaagaatggattcccttgcttgacaatg
cactctgatatgtctcaagacgaaagactcaaacaatatcaatcattcaagaatttcgaa
aagagaattatgattagtactgatttgctaggacgtggtattgatattcaacgtgtcaac
attgtattcaattatgatatgccagatgagccagactcttacttgcatagagttggtaga
gctggtagatttggtaccaaaggtttggccatttcattcatttcctcagatatgccatcc
aagattggatcctatgaaagaaccatcaatgatcaagaagttttagagaacattcaaaag
cgttttgaagtgaagatcaaggaaatgccaacccaaattgatgttggtacttacatgaca
tcataa
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