KEGG   Naegleria gruberi: NAEGRDRAFT_5569
Entry
NAEGRDRAFT_5569   CDS       T01241                                 
Name
(RefSeq) hypothetical protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
ngr  Naegleria gruberi
Pathway
ngr03018  RNA degradation
ngr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ngr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    NAEGRDRAFT_5569
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NAEGRDRAFT_5569
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ngr03019]
    NAEGRDRAFT_5569
   03041 Spliceosome [BR:ngr03041]
    NAEGRDRAFT_5569
Messenger RNA biogenesis [BR:ngr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     NAEGRDRAFT_5569
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     NAEGRDRAFT_5569
Spliceosome [BR:ngr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    NAEGRDRAFT_5569
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 8849517
NCBI-ProteinID: XP_002683245
JGI: Naegr1_5569
UniProt: D2UYM8
LinkDB
AA seq 103 aa
RKPRENILDLNQYISKQVLVKFIGGREVYGTLRGFDNMINLVLEDCYEFIRDLQDHHNRQ
TDENNKQYVRKLGIVICRGTSLMHLCPVDGTEEIENPFEDNED
NT seq 309 nt   +upstreamnt  +downstreamnt
agaaaacctagagaaaatattttagacttgaatcaatatatttctaaacaagttttggtt
aaatttatcggaggtagagaagtttatggtacactgagaggatttgataatatgattaat
ttggttttggaagattgctatgaatttattagagatttacaagatcatcacaatagacaa
accgatgaaaataacaaacaatatgtaagaaagctaggaattgtaatttgtagaggtacc
tcactgatgcatttgtgtcctgtcgatggtacagaagaaattgaaaacccttttgaagat
aatgaagat

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