Naegleria gruberi: NAEGRDRAFT_56951
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Entry
NAEGRDRAFT_56951 CDS
T01241
Name
(RefSeq) poly(A)-specific ribonuclease
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ngr
Naegleria gruberi
Pathway
ngr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NAEGRDRAFT_56951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngr03019
]
NAEGRDRAFT_56951
Enzymes [BR:
ngr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
NAEGRDRAFT_56951
Messenger RNA biogenesis [BR:
ngr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
NAEGRDRAFT_56951
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RRM_1
RNA_bind
RRM_ACIN1
hNIFK_binding
Motif
Other DBs
NCBI-GeneID:
8852557
NCBI-ProteinID:
XP_002681865
JGI:
Naegr1_56951
UniProt:
D2V2U5
LinkDB
All DBs
AA seq
707 aa
AA seq
DB search
MENTAHLPDQSATTAINLETSATMVSEPMNGTTTIANTTTTTTNNETETIQNNSSSKTSE
QIKKEVEDIANKIALERATNLRKEQPVKKPSSSIIDVTRLNFDEKFQEIQELLPTTAFIS
FDLEMTGLEVEYLKLKDSVKAFEVIQVGLCLWFVKDVVEEQPATDSMQDDEIIDQAERLR
RLIKSSMNKKTTTTVTAKPYNFYVFKSPTRSANVFSCQNTCLQFLVNNKMDINKVIGQGI
SYMNEDEEEAIRENVTRITKQKAASATNRRKSDRGDKIQVENLKPEQREFLENCKSRVAE
WFDNSEDDDINLDPCNTFERKLLFQEFGEMITLTTIYANNRTAFIRVQRASGESEEEKMQ
REIREAVNRDIGFSRIIRELKKHKHLFFIGHNAMLDMMHIVHKFIQPLPESSEQFKTIVR
ENFEHVIDTKYICETYPQISSALGRDTSLRTAFEYTLNNNNTDGPVFENFTEFYSSIKDF
DHVAAFDAFMTGYVFYRISHMIATNRNNKNFKGIADLTHIKEMTNIINIHNCDLNLKLLK
TNPSEDRSDVFLLTNLTQEITNEHIKDAFSRYGMIKIFWINAKYCWVKLSNKASVLSCNR
DVMNQMECHNEGMKTLAFEKGVTIMTYAQAQQGKILPTISQLASLVPLAMEDENSKKRKN
EEVEEQTTPSRNAANTSPSQNNNPKRVRRSSGVPPTESEKASSCNIL
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggagaatacagcacatctccctgatcagagtgcaacaacagcaataaatttggaaaca
tcagcaacaatggtttctgaaccaatgaatggcacaacaacaattgctaatacaaccact
actactacaaataatgaaacggaaacaatacaaaataattcatcaagtaaaacttcggaa
caaattaaaaaggaagttgaagatattgctaacaaaattgccttggaaagggcaacaaac
ttgagaaaggagcaacctgttaaaaaaccatcatcatcaatcattgatgttactagatta
aatttcgatgaaaagtttcaagaaattcaagaacttcttcctaccactgcatttatcagt
tttgatcttgaaatgaccggattagaagtagaatatcttaaattgaaagatagtgttaaa
gcatttgaagttattcaagttggtctctgtttgtggtttgttaaggatgttgtagaagaa
caaccagctaccgactctatgcaagatgacgaaattattgaccaagcagagagattaaga
agacttataaaatcatcaatgaacaaaaagaccactactacagtcacagctaagccatat
aatttctacgttttcaaatcaccaactcgttcagcaaatgtattttcatgtcaaaacact
tgtcttcaatttttagtcaataacaagatggatatcaataaggtaatcggtcaaggtatc
agttatatgaatgaggatgaagaagaagccatcagagaaaatgtcacaagaattaccaag
caaaaggctgcttctgctaccaatagaagaaagtctgatcgtggagataagattcaagtt
gaaaatttaaaaccagaacaacgtgaatttttggaaaattgtaaaagtagagttgctgaa
tggtttgataattcagaagatgatgatattaacttggatccttgcaatacttttgaaaga
aagttgctcttccaagaatttggagaaatgattacccttacaactatttacgccaacaat
agaacagcatttattcgagtacagagagctagtggagaaagtgaagaagaaaagatgcaa
agagaaatcagagaggctgtaaatagagatattggattttcaagaattatcagagaattg
aaaaaacacaaacacttattctttattggccataatgccatgctggatatgatgcacatt
gttcacaaatttatacaaccacttccagagtcttcagaacaattcaagactattgttaga
gagaattttgaacatgtaatagataccaaatatatctgtgagacttatcctcaaatttct
tcagctcttggcagagacacctctctgagaaccgcttttgaatatacactcaataataac
aacacagatggtccagtttttgaaaacttcacagagttttattcttccatcaaggatttc
gatcacgttgctgcatttgatgctttcatgactggttatgtattttacagaattagccac
atgattgcaacaaacagaaataataagaattttaaaggaattgccgatttgactcacatc
aaggaaatgacaaacattattaatatccataattgtgatttgaatttgaaacttttaaag
actaacccatctgaagatagatctgatgtcttcctcttaactaatctcacacaggaaatt
actaatgaacatattaaggatgcgttctcaaggtacggtatgattaagattttttggata
aatgccaagtattgttgggtcaagctttcaaacaaggcatcagttttatcatgtaacaga
gatgtcatgaatcaaatggaatgccataatgaaggaatgaaaactttagctttcgaaaag
ggtgtgaccattatgacctatgcccaagcacaacaaggaaaaatacttccaactatttca
caacttgcttctctagtgcctttggcaatggaagatgaaaactctaaaaagcgtaagaat
gaagaagttgaagaacaaaccacaccatcacgaaatgcagcaaacacctcaccttcccaa
aataacaatccaaagagagtacgcaggagtagtggagtcccaccaactgaatctgaaaag
gcatcttcttgcaacattctctaa
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