Naegleria gruberi: NAEGRDRAFT_57596
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Entry
NAEGRDRAFT_57596 CDS
T01241
Name
(RefSeq) 5'-3' exoribonuclease
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ngr
Naegleria gruberi
Pathway
ngr03008
Ribosome biogenesis in eukaryotes
ngr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
NAEGRDRAFT_57596
09123 Folding, sorting and degradation
03018 RNA degradation
NAEGRDRAFT_57596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngr03021
]
NAEGRDRAFT_57596
03019 Messenger RNA biogenesis [BR:
ngr03019
]
NAEGRDRAFT_57596
03009 Ribosome biogenesis [BR:
ngr03009
]
NAEGRDRAFT_57596
03016 Transfer RNA biogenesis [BR:
ngr03016
]
NAEGRDRAFT_57596
Transcription machinery [BR:
ngr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
NAEGRDRAFT_57596
Messenger RNA biogenesis [BR:
ngr03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
NAEGRDRAFT_57596
Ribosome biogenesis [BR:
ngr03009
]
Eukaryotic type
Pre-60S particles
RNases
NAEGRDRAFT_57596
Transfer RNA biogenesis [BR:
ngr03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
NAEGRDRAFT_57596
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
Motif
Other DBs
NCBI-GeneID:
8859482
NCBI-ProteinID:
XP_002679109
JGI:
Naegr1_57596
UniProt:
D2VA47
LinkDB
All DBs
AA seq
1047 aa
AA seq
DB search
MGVPGFIYWLVTNVIDTNDKKDAADDKIVYPINKQSILVQDILKQRVDNFYIDLNGLIHP
CCHPQTGKKPENEDDMMKRITAELLQLARTVQPNNLFYIAVDGVAPAAKQEQQRHRRFVA
ISENEQKLKFIGRIQSEITKEKDELTKEIKESEVDKIQQREKLLDSAIARMEAKKNHWDH
NVISPGTPFMMKCMSTVHQAAKLIATEFPHIKVIVSDSSVPGEGEHKILSYMKREKAINS
KEFSEMLHVVHGLDADLIMLTSLIGLPKIFSYRDSENVRMNKRDKELFNISELGRHFARV
IYSSIAELDTSSKSQNIDWSNANFVSDVVLLLMFVGNDFLPNVPSLVMHNHAASIIMYSY
AKYLLQCMEESGLGDNFDPRPHYLVDYTNSSMINIKNMIKAMQSIREESVIGMFAKLYHS
TIRHYQRQEDIYQQPSFIEDMKGCYSGSNLKLHKFDKMMKTISKNNASHKPFEVVFKILR
EYFKNHKKKNLRSLKEPEQLIKACFYNPAEVIHEINTSIILKYTDEIHQEYYHKKFGDSS
LLFRKTLVKEYLRGIVWAFNYYSYNDPPSWYWRYPEHYAPVMCDILDCYDEINDEYIKDI
TTFEKGEPLTAYQQLISILPKESMEACLPKTYTDILNNPKLDKFFPKEFEKDGNFSGIVY
KAVSLLPSIDLDLVKNITKEIDPLLSEEESRKNKFGIDVIYTAVDSEVNKKLSTLEDKVE
KEEKFKGDDTLLSGVFSKIDTNEMVFGSEVVASELKASVAAYKFSTPTVPIQDAYKFVTT
NSIPKAKLVSTLTRQLGTFKQVGGFVSMSEDQDLSNLSNNFRIKFPRKTTQGSKRAPNRN
EDYKSNRPSKASKRDNSQKTPHQKKESTTEESNEMQDEEKSISTERKPIRARVARNKRAE
IAEAKAKVTAEKKRTSEDSNEGPAKKKKKKNKSTKQEAKVETKTEEKKEASSSTEASSSA
ATETTATSESTATTTAAAASAESKTKKKRKRQKKNKGGKPATTGASSSTTTESTPAPEAA
VDASKNKLKESTNAKFKALLSKFTVKK
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccgggatttatttattggttggtaactaatgttatcgacaccaatgacaag
aaggatgctgctgatgataaaattgtctatccaattaataagcaatcaatactggtacag
gatatattaaaacaacgtgtagataatttctatattgatttgaatggtctgattcacccc
tgttgccatcctcaaacaggaaagaaacctgagaatgaagatgacatgatgaaacgaata
actgctgaattgttacaattggccagaacagtgcaacctaataatttgttttatattgct
gttgatggtgttgctccagcagccaaacaagaacaacaacgtcatcgtagatttgttgca
attagtgaaaatgaacaaaaacttaaatttattggaagaattcaatcagagattacaaag
gaaaaggacgaattgactaaggaaatcaaagaaagtgaagtggataaaattcagcaaaga
gaaaagttattggactctgctattgcaaggatggaagctaaaaagaatcactgggatcac
aatgtaatttcaccaggtacacctttcatgatgaaatgcatgagtacagttcaccaagct
gctaaattgattgctactgaattcccacatattaaggtgatagtgagtgacagtagtgtt
cctggagaaggtgaacacaaaattttgagttatatgaagagagaaaaggcaattaacagt
aaggaattctctgaaatgcttcatgtagtacacggtttggatgctgacttgatcatgttg
acatccttaattggacttccaaagattttcagttacagagattcggaaaatgttagaatg
aataagagagacaaagaattgtttaacatttctgaattgggtagacactttgctagagtt
atctattcttcaattgcagaattagacacatcatcgaaatcacaaaatattgattggtct
aatgccaactttgtttcagatgttgtgctgcttttgatgtttgttggtaatgactttttg
ccaaacgttccttcactagtcatgcacaaccatgctgcttctattatcatgtactcatat
gccaaatatttattacaatgtatggaagaatctggtcttggggataattttgatccaaga
cctcactatcttgtcgattatacaaatagttctatgatcaatattaaaaatatgattaag
gctatgcagtcaattagagaagaatctgtaattggaatgtttgctaaattatatcattct
actattagacattatcaaagacaagaagatatttatcaacaaccttctttcattgaggat
atgaaaggttgttattctggttccaatcttaaattgcacaaatttgataaaatgatgaag
acaatttctaaaaacaatgcctcacacaaaccatttgaggtagtattcaagattttacgt
gaatatttcaaaaaccataagaaaaagaacttgagatcattaaaggaaccagaacaattg
atcaaggcttgcttttataatcctgcagaagtaattcacgaaattaatacttcaattatt
ttgaaatatacagatgaaatccatcaagaatactatcataagaaatttggagattcctct
ttgcttttcagaaaaacactagttaaagaatatcttcgtggtattgtttgggctttcaat
tactattcctacaatgatccaccatcttggtattggagatatcctgaacattatgctcct
gtcatgtgtgatattttggattgttatgatgaaattaatgatgaatacattaaggatatt
actacttttgaaaagggtgaaccattaacagcttaccaacaacttatctccattcttcca
aaggaaagtatggaagcttgtttgccaaagacatacactgacattcttaataatccaaag
ttggataagttcttcccaaaggaattcgaaaaggatggtaacttttctggtattgtttat
aaggctgtatcattattaccttccatcgatcttgatttggttaaaaatatcactaaggaa
attgatccactcttatctgaagaagaatcgagaaagaacaagtttggtatcgatgttatt
tatacagcagttgattcagaagttaacaagaagctttctacactcgaagataaggttgaa
aaggaagaaaaattcaaaggtgatgatacccttctctctggagttttctcaaagattgat
acaaatgaaatggttttcggaagtgaagtagttgcaagcgaattaaaggcatcagtcgct
gcttacaagttcagtacacctacagtaccaattcaagatgcttacaaatttgtcacaaca
aattcaattcctaaagccaagttggtttccacactcactagacagctcggtacattcaag
caagtaggaggatttgtcagtatgtctgaagatcaagatttgagcaatttgagtaacaat
ttcagaatcaagttcccaagaaagaccactcaaggatcaaagagagctcctaatcgtaac
gaagattacaaatcaaatagaccaagtaaggcttctaagagggataattcccaaaagact
ccacaccaaaagaaggaatctaccacagaggaatcaaacgaaatgcaggatgaagaaaag
tctatctccactgaaagaaaaccaatcagagccagagtcgcacgtaacaagagagctgag
attgctgaggctaaggccaaggttactgctgaaaaaaagagaacttctgaagatagcaat
gaaggtccagccaaaaagaagaagaagaagaacaagtcaacaaaacaagaagccaaggtt
gaaaccaagactgaagaaaagaaggaagcatcttcatcaacagaggcctcaagctcagca
gccactgaaacaacagcaacaagtgagtcaactgctaccaccacagccgctgcagcctcc
gcagaaagcaagaccaagaagaagagaaagagacaaaagaagaataagggaggcaagcca
gcaacaacaggagctagctcatctaccacaactgaatcaactcctgctccagaagctgct
gttgatgccagcaagaacaagttgaaggaaagtacaaatgccaaattcaaggccttgttg
agcaagtttactgtaaagaagtaa
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integrated database retrieval system
