Naegleria gruberi: NAEGRDRAFT_58671
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Entry
NAEGRDRAFT_58671 CDS
T01241
Name
(RefSeq) RNA polymerase II largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ngr
Naegleria gruberi
Pathway
ngr03020
RNA polymerase
ngr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NAEGRDRAFT_58671
09124 Replication and repair
03420 Nucleotide excision repair
NAEGRDRAFT_58671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngr03021
]
NAEGRDRAFT_58671
03400 DNA repair and recombination proteins [BR:
ngr03400
]
NAEGRDRAFT_58671
Enzymes [BR:
ngr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NAEGRDRAFT_58671
Transcription machinery [BR:
ngr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
NAEGRDRAFT_58671
DNA repair and recombination proteins [BR:
ngr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
NAEGRDRAFT_58671
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
8862675
NCBI-ProteinID:
XP_002674726
JGI:
Naegr1_58671
LinkDB
All DBs
AA seq
1650 aa
AA seq
DB search
MNGAFTYSPVDLSSIDRIQFGILNPHVVEKMSACEIIHAETEEKGLPKEGGLMDLRMGTV
NSALSCMTCGCGVSECPGHFGHVNIHPTFNILFLKTIVKILKCTCVHCSRLLFNRNTPEF
KRIQQIANKRKRFNELMKLKPMDKCMIDDYTGCGGIQPKISKNQLSITQIFPNSNEIKQE
IKAESVLQIFKRISTQDLELLGFDSINSNPEWMILTCLPVPPPHVRPSVMHGLNDKAEDD
LTHKLADIIKSNATIQKLSKSGSPQHYLDDMIKILQYHCATYMNNEISGVPMSTTKNGRM
LKSLRQRLKGKEGRVRGNLMGKRVDFSARTVITPDPTIEIDQVGVPRTIARNMTVPEKVT
PFNFERMNELVMNGPETYPGAKYVLRDDGTRIDLKFLSDRSTDQVQLQYGYTIERHLQDG
DVVLFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVVTPYNADFDGDEMNLHLPQSLQTKT
ELLELMMVPKNIITPQSHRPLIALVQDTLLAGSKCTRRDVYIEKDVMMNCLMYLQDFNGQ
LPVPAILKPKPLWTGKQLFSLLLPSIDYYGISSTHDDEVGDLKHLDDHLPEFDTGIIISN
GELLTGILDKKSLGSSHGSLIHIIVNDKGTQEGKKFLGQCQHVLNYWLLQHGFSVGIGDT
IADGETVKKIEEIINNAEREVKKIVKQAHNGLVTAEPGRTVEQSFERSINSTLNAAREDA
GMHVKKSLKDSNSIKSMVTSGSKGSYLNISQIIACVGQQNVEGKRVPFGFKNRTLPHFST
DDHGPESRGFVANSYLRGLTPQEFFFHTMGGREGLIDTAVKTAETGYIQRRLVKAMEDVK
VNYDGTVRDASGNIIQFLYGEDGMDPIKLESQSFEMLSLSDEIFEEKYKWSTKLEDHNIP
ESDLNEISLDFANYLMKLNDEYKKLQEYRHLVRDEILQSVDSKIVFPVNLSRLIKRVQRE
YGRKHSTFNNSSDLNPLYVIKKVNSTCEELLIIKGKDKLSEEAQRNAILLFSIFLKFSLA
SKVVMNELNLTRESLEYLLGEVKYTFLNGLVQPGEMVGCIAAQSIGEPATQMTLNTFHNA
GVSSKNVTLGVPRLKELLDVSRNIKTPGLTIYLKNDNDCEIAKMVKEELEYSNLGSITRS
TQIIYDPDIFNSVIESDQFFIREMLEEKTIDPNTFSPWSLRFVLDREMMSEHLNMSQIAN
IIKQEFQNDISCFYSDDNSEELILIIRIRNSEKSKSETEDDEEDSSMIVEFLKRLESNML
SQLSLKGHNNLKKVFYRKDENIKFFSNKGVEKKTRWSLETEGCDLLSVMSHPQVDFRNTL
SNDVIEVEKVLGIEACRNLLMKELRKVIEFDGSYVNYRHLAILCDVMTQGGVITAVTRHG
LARSDNGPLMRCSFEQTVEVLVEAAQFSDVDTLKGVSANVMVGKLAPIGTGTFDLVLDEQ
LLKETIQPTFMKASHLTNISISSPHAVMTPYHSTFSTPSCSTPFSSSPSSPWTPQYSPYT
SAFSPITSIASSPTSHNASYSPSANHNYSPSSPANYSPSSPLGSYSPSSPNYRDYSPTSP
LINGPMSPIYSPSSPAYTPMNSPGRYSPSSPAFSPLSPNVYSPSSPGRYSPSSPSSPNIY
SPTSPIYSPTSPYSPSSPSFSPTSPIDWKQ
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atgaacggtgcctttacctactcaccagtggatttgtcttccattgatagaattcagttt
ggcattttgaatccacatgtggttgagaaaatgtctgcatgtgaaataattcatgccgaa
actgaggagaaaggtcttccaaaggaaggtggtttgatggatcttcgtatgggaactgta
aatagtgcactctcctgtatgacatgtggctgtggagtgagtgaatgtccaggacacttt
ggacatgtcaatattcatccaacatttaatatattattcctaaagacaattgtcaagata
ttgaaatgtacatgtgtccattgcagtagattgctcttcaatagaaacactccagaattc
aagagaatccaacaaatcgccaacaaacgaaaaagatttaacgaattgatgaaactgaaa
ccaatggacaagtgcatgattgatgattatacaggttgtggtggtattcaacctaaaata
tcgaagaatcaactgtccatcactcaaatatttccaaattccaatgaaatcaagcaagaa
atcaaagctgaaagtgtcttgcagattttcaagagaatttcaacacaagatttggaatta
cttggttttgattcaattaattcgaatccagaatggatgatattaacttgtcttccagtg
ccacctccacatgttcgtccttctgtgatgcatggcttgaatgataaggcagaagatgat
ttgactcataaacttgctgacattatcaagtcaaatgccacaattcagaaattgagcaaa
tctggatctccacaacattatcttgatgacatgatcaagattttgcaatatcattgtgct
acttatatgaataatgaaatttctggagtgccaatgtcaactaccaagaatggaagaatg
ttaaaaagtttgagacaaagattgaagggcaaggaaggacgtgtcagaggtaatttgatg
ggtaaacgtgtagatttctcagcaagaactgtgattactccagatccaaccattgaaata
gatcaggttggtgttccaagaacaattgcaagaaatatgacagttccagaaaaagtgaca
cctttcaactttgagagaatgaatgaattggtcatgaatggtccagaaacctatccaggt
gctaaatacgtccttcgtgatgatggtactcgaattgatttgaaatttctttcagataga
tcaacagatcaagttcaattacaatacggttacacaattgaacgtcatttacaagatggt
gatgtcgttctcttcaatagacaaccttcccttcacaaaatgtccatgatgggtcacaga
gttaaggttatgccttacagcactttcagattaaatctctccgtagtaactccgtacaat
gccgattttgacggagatgaaatgaatttgcatttgcctcaatctttgcaaaccaaaact
gaattgttagagctcatgatggttccaaagaatatcatcactcctcaaagtcatcgtcct
ctcattgcactagttcaggatacattactggcaggttcaaaatgtacaagaagagatgtc
tatattgagaaggatgtcatgatgaattgtctaatgtatttgcaagattttaatggtcaa
ttgccagttccagcaattttaaagccaaaaccattgtggactggaaaacaattattttca
cttctattaccctcaattgactattatggaatttcttccacacacgatgatgaagttgga
gatttgaaacatttggatgatcatttacctgaattcgatactggaataatcatttctaat
ggagaactcttaacaggtattttagataagaaatctttagggtcatcccatggctcctta
attcacatcattgttaatgataagggaactcaggaaggaaagaaattccttggacaatgt
caacatgtactgaactattggttgcttcaacacggattcagtgttggtattggagataca
attgcagatggggaaactgttaagaaaattgaagaaatcattaataatgctgagagagaa
gttaagaaaattgtcaaacaagctcataatggattggtgacagctgaacctggaagaaca
gttgagcaatcatttgaaagatcaatcaattcaacattaaatgccgccagagaggatgct
ggtatgcatgtcaaaaagtcactcaaagattcgaatagcatcaaatcaatggttacttca
ggaagtaagggttcctaccttaacatttcacaaatcattgcctgtgtcggtcaacaaaac
gttgaaggtaagagagtacctttcggattcaagaacagaacactccctcactttagtaca
gatgatcatggacctgagagtcgtggttttgttgccaacagttacctcagaggacttaca
cctcaggaattcttcttccacacaatgggaggtcgtgaagggttgattgatacagctgtc
aagacagctgagactggttatattcagagaagattggtgaaggccatggaagatgttaag
gtcaactatgacggaactgtgagagatgcttctggaaatattatccagttcttgtatggt
gaagatggaatggatccaatcaagttggaaagccaatcgtttgaaatgttaagtttgagt
gatgagatatttgaagaaaagtacaaatggtcaaccaagttggaagaccacaacattcca
gaaagtgatttgaatgaaatttccttagattttgccaattatttgatgaaactgaatgat
gaatataaaaaattgcaagaatatcgtcacttggtaagagatgaaatattacaatcagta
gattcaaagattgtctttccagtcaacttgtccagattgatcaagagagttcaaagagaa
tatggtagaaagcactctactttcaacaactcctcagatttgaatccactctacgttatc
aagaaggtcaactctacatgtgaagagctactcatcattaagggaaaagataaattatca
gaagaagctcaaagaaatgcaattttgcttttttcaattttcttgaaattttcattggca
tccaaggttgttatgaatgaattgaatttgactcgagaatctcttgaatatttattggga
gaggtcaagtacacattcttgaatggtttggttcaacctggtgaaatggttggttgcatt
gcagctcagtcaattggtgaacctgctactcaaatgactttgaatacctttcacaatgct
ggtgtttcgtctaagaatgttactttgggtgttcctcgattgaaagaactcctcgatgtt
tcaagaaatatcaaaactcctgggttgaccatttatctcaaaaatgataatgattgtgaa
attgccaaaatggttaaggaagaattggaatattctaatttaggttccattactagatct
actcagattatctacgatccagatattttcaattcagttattgaaagtgatcaatttttc
attagagaaatgctggaagaaaaaaccattgatcctaatacgtttagtccatggtcattg
agattcgtattagatagagaaatgatgagtgaacatttgaacatgtctcagattgcaaat
attatcaaacaagaatttcaaaatgacatttcatgtttctattcggatgataattcagag
gagttaatcttgataattcgtattcgaaacagtgagaaatccaaatctgaaactgaggac
gatgaagaggattcttccatgattgttgaattccttaaaagactcgagtccaacatgctt
agtcaactctcccttaaaggtcacaacaatctcaagaaggttttctacagaaaagatgaa
aatattaaattcttttccaataagggagttgaaaagaagacaagatggtcattagaaaca
gaaggttgtgatttactttcagtcatgtctcatccacaagttgattttagaaataccttg
tcaaatgatgttattgaagttgagaaagtgttgggaattgaagcttgtagaaatttatta
atgaaagaattgagaaaggttattgagtttgatggttcctatgtcaattatagacatttg
gctattttatgtgatgtaatgactcaaggaggtgttattacagctgtcactcgtcacggt
ttggccagaagtgataatggaccacttatgagatgttcattcgagcaaacagttgaagta
cttgtggaagcagctcaattttcagatgttgataccttgaaaggagtttcagccaatgtt
atggttggtaaattggctccgattggaacaggaacttttgatctagtcctagatgagcaa
ttattgaaggaaaccattcaaccaacctttatgaaggcttctcatttgacaaatatttca
ataagctctcctcatgctgtcatgactccttatcactcaactttctctacaccttcctgt
tcaacaccattctcttcatcaccatctagtccttggactccacaatattctccatacact
tctgcattttcaccaattacatccattgcaagttctccaacaagtcataatgcaagctat
tcaccaagtgcaaatcataattattcaccaagcagcccagccaattatagcccaagctca
ccattaggatcttattcaccaagtagtccaaattatagagactatagtccaacatctcca
ttaattaatggtccaatgtcaccaatctatagtccttcttcacctgcctacactccaatg
aatagtcctggaagatatagccctagctctcctgcattctcacctctgagtccaaatgtt
tattcaccatccagtcctggaagatacagccctagctctccatcaagtcctaatatttat
tcaccaactagtccaatctatagtccaacatctccatactctccgtcaagtccaagtttt
agcccaacttcaccaatagattggaaacaatag
DBGET
integrated database retrieval system
