KEGG   Naegleria gruberi: NAEGRDRAFT_61034
Entry
NAEGRDRAFT_61034  CDS       T01241                                 
Name
(RefSeq) hypothetical protein
  KO
K03011  DNA-directed RNA polymerase II subunit RPB3
Organism
ngr  Naegleria gruberi
Pathway
ngr03020  RNA polymerase
ngr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ngr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NAEGRDRAFT_61034
  09124 Replication and repair
   03420 Nucleotide excision repair
    NAEGRDRAFT_61034
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ngr03021]
    NAEGRDRAFT_61034
   03400 DNA repair and recombination proteins [BR:ngr03400]
    NAEGRDRAFT_61034
Transcription machinery [BR:ngr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     NAEGRDRAFT_61034
DNA repair and recombination proteins [BR:ngr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      NAEGRDRAFT_61034
SSDB
Motif
Pfam: RNA_pol_L RNA_pol_A_bac Fer4
Other DBs
NCBI-GeneID: 8860905
NCBI-ProteinID: XP_002668960
JGI: Naegr1_61034
UniProt: D2W3Y1
LinkDB
AA seq 324 aa
MNDYHQDNNKAQLSILALTDEYCKFKLSNVDTSIANALRRIMIAEVPTLAIDLVEFEMNS
SVLHDEFIAHRLGLIPLTCLNINSFSYTSDCSCTGHCEKCSVELTLHVKCTESHRDVTSN
DLISNNPSCAPCTLSATSRDNENEHNGITIVKLKRGQEIKLKAIAKKGVGKGHAKWSPVA
ITTYYIVPDIRIKGCQNTPVNPSDQDNQTEVPAADWIGKFINSCPTKVFSVTNDDRLIID
LDKCTYCNECKDFVNDELIPNTSPEFKDFVSIKEKDLGGKREFIFTVETTGSQTPENIVL
LGFDTLVGKLAKTRAELIKLRATH
NT seq 975 nt   +upstreamnt  +downstreamnt
atgaacgattatcatcaagacaataacaaggctcaactttccatcttagccttgactgat
gagtattgtaaatttaaattatctaatgtggatactagtattgctaatgccctaagacgt
atcatgatcgctgaggtacctactcttgctatcgatcttgttgaatttgaaatgaatagc
agtgttcttcacgatgaatttattgctcatcgtttaggattaatccctcttacatgttta
aatattaattcttttagttatactagtgattgtagttgtacaggccattgtgaaaagtgt
tctgttgaattaacactccacgtcaagtgtacagaatcacacagagatgttacaagtaac
gatttaatttctaataatccttcttgtgcaccttgtacattatcggcaacttctcgtgat
aatgaaaatgaacataatggtattacaattgttaaattgaagagaggacaagaaattaaa
ttaaaggccatagctaagaaaggtgtaggaaaaggtcacgctaagtggtctcctgttgct
attacaacttattatatcgttcctgatattagaattaaaggatgtcaaaatactccagtc
aatccatccgaccaagataatcaaactgaagtacctgctgctgattggattggcaaattt
attaactcttgcccaactaaggtattttctgtaaccaatgatgacagacttatcattgat
ttggataaatgcacctattgtaatgaatgcaaagactttgtcaacgatgaattgatacct
aatacttcaccagaattcaaagattttgtatcaattaaggaaaaggatttaggaggtaaa
cgtgagtttattttcacagttgaaacaacaggatcgcaaactccagaaaatattgtatta
ttaggatttgacactctagttggtaaattggcaaagacgcgtgctgagctcatcaaactt
cgtgcaactcattaa

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