Naegleria gruberi: NAEGRDRAFT_61662
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Entry
NAEGRDRAFT_61662 CDS
T01241
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ngr
Naegleria gruberi
Pathway
ngr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
NAEGRDRAFT_61662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngr03021
]
NAEGRDRAFT_61662
03019 Messenger RNA biogenesis [BR:
ngr03019
]
NAEGRDRAFT_61662
Transcription machinery [BR:
ngr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
NAEGRDRAFT_61662
Messenger RNA biogenesis [BR:
ngr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
NAEGRDRAFT_61662
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
zf_PCFS4
Pcf11_C
VHS
Pfc11_Clp1_ID
zf-C2H2_11
zf-C2H2_6
zf-C2H2
RUBY_RBDX
zf-C2H2_2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
8863694
NCBI-ProteinID:
XP_002683322
JGI:
Naegr1_61662
UniProt:
D2UX73
LinkDB
All DBs
AA seq
462 aa
AA seq
DB search
MSNLPEVVQDFSEALQTDLKTADSMQIYVLTEIAQDNIEYAKEISKVICTRINTAPTGEK
LYALYLLDSIAKKIGGPYIQEFSKSISDVFFYAYKQNKDIPNSKKSYLKLLSTWGEVFGE
EKAKEIKNRIDVAEGGGQRVVQQPPKQQPQSSNSGMKRVGSSSDQSEQALLGTLLEKLQR
NPELINDPQTASLFKQLTSKMSINLPQQIGRPNPYAPPNQTTSVNINNNPYSGNSSKNTQ
QTNQFSNIPSTHSMMQSSSQQQSNKPSSNPVHRLYEALTKQCMNCGVRFSSQKQLGEHLD
VHQRKNQFFRNNKDLSRKWYSGEDEWIKLRDNDETEAIQCPGAIIFGDSESFNPQSLTKT
ASTTALSAVDFFATFNTNKSKPKDVNEGSGEIVADTEQDTCPVCHEELEKFYNSETAEWM
LKGAVYDESCNLYVHQNCLSSSHKRKSDGDAGGFNKKVKQEF
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacttaccagaagttgtgcaagattttagtgaagctcttcagactgatcttaaa
acagctgatagcatgcaaatttatgtgttaacagaaattgcacaagataacattgaatat
gctaaggaaatatctaaagtaatttgtactagaattaatactgctccaactggagagaaa
ctctatgctctctaccttttggattctatagcaaaaaagattggaggaccatacatacaa
gaattttcgaaaagtatttcagacgtatttttctatgcatataaacaaaacaaagacatt
ccaaactctaagaaatcatatttaaaactcctctcaacctggggagaagtatttggagaa
gaaaaagcaaaggaaattaagaatagaattgatgttgcagaaggaggaggacaaagagtt
gtccaacaaccaccaaaacaacagccacaatcatcaaatagtggaatgaaacgagttgga
tcttcatctgatcaatccgaacaagctcttttaggaacacttcttgaaaaattacaaaga
aatcctgaattaatcaatgatcctcaaacagcatctttgtttaaacaattgacatctaaa
atgagcattaatcttcctcaacaaattgggagacctaatccatatgctcctccaaatcaa
acaaccagtgtcaacattaataataacccatattcgggaaattcctcaaaaaacacacaa
caaacaaatcaattttcaaatattccctcaacccattccatgatgcaaagctcctctcag
caacaatccaataaaccatcatctaatccagtgcatcgactgtatgaggcactcactaaa
cagtgcatgaactgtggagtgagattctcatcccagaaacaacttggagaacatttagat
gttcaccaaagaaagaatcaattctttagaaataataaggatttatcgagaaagtggtac
tctggggaagatgaatggataaagctaagggataatgacgaaaccgaagcaattcaatgc
cctggagcaattatatttggtgattcagaatcatttaatcctcaatctctcaccaaaaca
gcctcaacaaccgccctctcagcagtcgatttctttgctactttcaataccaacaagtcc
aaacctaaagatgtgaatgaaggtagtggcgaaattgttgccgacactgaacaagacaca
tgtccagtttgtcatgaggaattagaaaagttctacaattcagagacagcagaatggatg
ctgaaaggtgctgtgtatgatgaatcatgcaacctctacgttcaccagaattgcctttcc
tcttcgcacaagagaaaatcagatggagatgcaggaggtttcaataaaaaagtaaagcaa
gagttctag
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