KEGG   Naegleria gruberi: NAEGRDRAFT_62413
Entry
NAEGRDRAFT_62413  CDS       T01241                                 
Name
(RefSeq) hypothetical protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ngr  Naegleria gruberi
Pathway
ngr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ngr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    NAEGRDRAFT_62413
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ngr03041]
    NAEGRDRAFT_62413
Spliceosome [BR:ngr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    NAEGRDRAFT_62413
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WDR55 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd PRP4 EIF3I Beta-prop_TEP1_C Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_DCAF4 WD40_RFWD3 NBCH_WD40 Beta-prop_SPT8 ANAPC4_WD40 WD40_MABP1-WDR62_1st WD_LRWD1 Beta-prop_IFT140_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th DUF7587 DUF3549 Glyco_hydro_45 DUF4404
Other DBs
NCBI-GeneID: 8852300
NCBI-ProteinID: XP_002682533
JGI: Naegr1_62413
UniProt: D2V0T9
LinkDB
AA seq 605 aa
MLSDASHLPDEQKIQLILLSPNFNTQFKIPTIDLDVRLKLREMGEPMTLFGEGSSERRER
LKRMIAIQKLRESEDVEQPSSASSASTRSVSEQSVIMADFRKELIQSGRQDLVEQMQDDE
EEATVEEEEEEEDLSKQYFTFQSTNPHLAEVREQIAMHSLQSSHQRLESIREYVEIVKKD
KLGEPTIKQGLAAHLVERKNRFVKNLQQNLSLVSSITGDSRPISQIKFLGHDFGKCISSG
WSGDMKVWQVANPCFKEEDNMIDESEEVSTKPEVMNEDESFSCTQLRSFSNAHDERITCL
QVRNEYVLSSSADRTIKLWNLEAEDTDKPVQIFNGTSENNEDINSREIVTAGNAHTSVIN
RLSIHPSGQQFISTSSDQTWCMWDLSRNELLYSQEGHYSPVYGVDHHPDGGLLCTTDMNG
IVKLWDLRTGLLVANLVHHVKEVLNCSFNPYNGINLVTGGVDGLINVWDLRNISQTIAAK
QTDSNPEQFKQDPVYSIPASGKLMNTIMYEPSCGRSIISSGFDGVVRFWDPISFKPISQS
SVGDRILCMDVVQYPRSCLPSTDEESVYEFGSWSEHLMVVCGGYDKKWRKLTSFSRRALV
NSSNK
NT seq 1818 nt   +upstreamnt  +downstreamnt
atgttgtctgacgcttctcaccttccagatgaacaaaaaattcaactcatcctcctctca
ccaaattttaatacacaattcaaaatacccaccatcgatttagatgtgaggttaaagttg
agagagatgggagagccaatgaccttgtttggagaaggttcgtccgagagaagagaacgt
ctgaagagaatgatagccattcaaaagcttagagaatcggaagatgtagaacaaccatca
tcagcatcatcagcatcgacgagatcagtctcggaacaatcagttattatggctgatttt
aggaaggaattaatacaaagtggaagacaagatttagtggagcaaatgcaagatgatgaa
gaggaagcaacagtagaggaagaagaagaagaagaggatttatcaaaacaatattttact
ttccaaagtacaaatccacatttggcagaggttcgtgaacaaattgcaatgcactctctg
caatcatcacatcaaagattggagagcattagagaatatgtagaaattgtaaagaaggat
aaattgggagaaccaactattaaacaaggtcttgcagcacatttagtggagagaaagaat
agatttgtaaagaatttacaacaaaatttatcactggtttcttcgattactggtgattct
aggccgatttcacaaatcaaatttctgggacacgattttggaaaatgtatttcatcagga
tggtcaggtgacatgaaagtttggcaggttgccaatccatgtttcaaggaagaagacaat
atgattgacgagagtgaggaagtatcaacaaaaccagaagttatgaatgaagacgaatcc
ttctcctgtactcaattgagaagtttctcaaatgctcatgacgagagaattacatgtcta
caagtgagaaatgagtatgtgttgagttcttctgctgacagaactattaagctttggaat
ttggaagctgaggatactgacaaacctgtacaaatatttaatggaacatcagaaaacaat
gaggatatcaattcgagagaaattgtcactgctggaaatgcacatacatcagtaatcaat
agattgtccattcatccaagtggccaacaattcatcagtacaagttctgaccaaacttgg
tgtatgtgggatttatcgagaaacgaattactctattcacaggaaggtcactattctcca
gtttatggtgtagaccatcatcctgatggaggattattgtgtacaactgatatgaatggt
attgtcaaattatgggatttaagaactggcttgttggtggccaaccttgttcaccatgtc
aaggaggtactcaattgctcattcaatccatacaatggtattaatttggttactggtggt
gtggatggtttgattaacgtttgggatttaagaaatattagtcaaaccattgctgccaaa
caaacagattccaatcctgaacaatttaaacaagatccagtttactctataccagcaagt
ggtaaactgatgaatactatcatgtatgagccatcatgcggtagatcaataatttccagt
ggttttgatggagttgttagattttgggatccaatatctttcaaaccaatttctcaatcc
tctgtgggagatagaattctatgcatggatgtagttcaatatccaagaagttgcctacca
tccactgatgaagaaagtgtgtacgaatttggaagttggagcgagcacttgatggtcgta
tgtggtggctatgataaaaagtggagaaaactaacaagcttctcaaggagagccttagta
aactcttccaataaatag

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