Naegleria gruberi: NAEGRDRAFT_66154
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Entry
NAEGRDRAFT_66154 CDS
T01241
Name
(RefSeq) replication factor C large subunit
KO
K10754
replication factor C subunit 1
Organism
ngr
Naegleria gruberi
Pathway
ngr03030
DNA replication
ngr03410
Base excision repair
ngr03420
Nucleotide excision repair
ngr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NAEGRDRAFT_66154
03410 Base excision repair
NAEGRDRAFT_66154
03420 Nucleotide excision repair
NAEGRDRAFT_66154
03430 Mismatch repair
NAEGRDRAFT_66154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngr03032
]
NAEGRDRAFT_66154
03400 DNA repair and recombination proteins [BR:
ngr03400
]
NAEGRDRAFT_66154
DNA replication proteins [BR:
ngr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
NAEGRDRAFT_66154
DNA repair and recombination proteins [BR:
ngr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
NAEGRDRAFT_66154
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_lid_RFC1
Rad17
AAA_14
AAA_30
AAA_assoc_2
AAA_22
nSTAND3
RNA_helicase
PTCB-BRCT
BRCT_2
RuvB_N
AAA_19
AAA_16
AAA_18
Motif
Other DBs
NCBI-GeneID:
8850488
NCBI-ProteinID:
XP_002678510
JGI:
Naegr1_66154
UniProt:
D2VBB2
LinkDB
All DBs
AA seq
994 aa
AA seq
DB search
MPPKPAPGTQKITSFFSVKKPTSSSTDKSPKKPSASSSNGNIENPNKRKRESVTLELSDD
SDGCASPILTRSQRAEQVKSPSSSTPSKSTTSTTPTKSTPTKSSASKTTTSSTSSSSKST
KSTPTKSTVTLKKQPTSVKDEDWSDDERDFGKDKIVLNKATPTKSPVVAQKNTKIILDDD
ALSSQDVVSSPSTKKRKTSSPFTKSPRKVKEEEVEEKPKTTPKKEVKKEEKKKKNDDDDE
EKPAETKKRNFYDKTQHQNQQKAKNHGCKTVPVGKANCLKDKSFVITGQMESLDRDEMED
LIKQYGGVIRGNVSGRTSFVVVGDGPGESKMKKVREHKTKQLSEDDLLEMIAKSNPSGKD
SMDETDDDVSPPPQKFIPPSKPNSVGASTTQVIKSKNADDQLWVEKYKPSTSSQIIGHNK
ECGLLLNWLKEWHANLDKEIQAASTQTKGRKKAATEWKRAAFLSGPPGIGKSTSAALIAK
EAGFTNIVELNASDSRSKKAMKEQIVESCLSNNISNYFQKKGQPKPKDDKQRTIVIMDEV
DGMSSGDRGGVVELVQIIKQTRVPVICIANDRSKISLKTLITHCLDLKFSRPSKATITKK
LLEVCKKENLSIDNNALEYMVESLNNDIRSVLNNLQLINRYSAKDHIGYLDAKSSDLTKT
SSTDGIFDVVKDVLGQNSKKYNERLEDFYFDPMLVPLFVEQNYINIRPPGDDKERIQRIS
YASDSISMGDIVNSKIRKEMSFGLMNSHAFYSTMYPAYFIRGSFQALRGYDKYYQFPAVL
GKGSTTTKNYNALKTIQKTTSLKASADTLEMLDYLPLLSKTLLNPLLGGDKDVQETIEAM
DEYQISRDDLEFMCELSTFKGKNSSDQNKDWFSEIDTKTKTALTRQYNKAHKGFNKVSAA
AALSKVEDEENPEAEEEDEEEDLKADKFVTKMKNIAKLEAFEKKREKAEKAEKKSTKKTT
KKETTKKESTKKESTSKKEVKKETEKKPLVLKKK
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgccaccaaaacctgctccgggaacgcaaaagattacatccttcttttctgtgaagaaa
ccaacatcttcatcaacagataaatcaccaaaaaagccctcagcaagcagtagcaatggc
aatattgaaaatccaaacaaacgtaaaagagagtctgtcacccttgaattgagtgatgat
tctgatggatgtgcatcaccaattcttaccaggtctcagagagcagaacaagttaaatct
ccatcatcatccacaccttccaaatcaacaacaagcacaacaccaaccaaatctacacca
actaaatcatcagcatctaaaacaaccaccagtagtactagcagcagtagtaaatcaacc
aaatctacaccaactaaatccactgtcacactcaagaagcaaccaacaagtgtaaaagat
gaagattggagtgatgatgaaagagattttggtaaagacaagatagtgttgaataaggca
acaccaaccaagtctccagtagtagctcaaaagaacacaaagattatattggatgatgat
gcgctcagtagtcaagatgttgtttcatccccttccactaaaaagagaaagactagctct
ccattcaccaaatcgccaagaaaagtcaaagaagaggaagttgaggagaaacctaaaaca
acaccaaagaaggaggttaaaaaagaggaaaagaaaaaaaagaatgatgacgacgatgaa
gagaaaccagccgaaaccaaaaagagaaacttttatgataagacacaacatcaaaatcag
caaaaagctaaaaatcatggatgtaaaactgtgcctgtcggaaaagcaaattgtctcaaa
gacaaatcttttgttattactggtcaaatggaatcactcgatagagatgaaatggaagac
ctcattaagcaatatggaggtgtgattcgtggaaatgtttctggaagaaccagctttgtt
gtagttggtgatgggcctggagaaagtaaaatgaaaaaagttagagaacacaaaactaag
caactttcagaggatgatttgttggaaatgattgcaaaatcaaacccaagtggaaaagat
tctatggatgaaacagatgatgatgtcagtcctccaccacaaaagtttattcctccttca
aaaccaaactctgttggtgcttccaccactcaagttatcaaatccaaaaatgctgacgat
caactttgggttgaaaagtacaaaccatccacgtcttcgcaaattattggacataataag
gaatgtggacttttacttaattggttaaaggagtggcatgcgaatcttgacaaggaaatt
caagctgcctcaacgcaaactaagggaagaaagaaagcagcaactgaatggaagagagca
gccttcctatctggtcctccaggtattggtaaatcaacttcagcagctctaattgccaag
gaggctgggtttacaaatattgtagaattgaatgcatctgatagtagaagcaaaaaggca
atgaaggaacaaattgtagaatcttgtctctccaataatatttccaattatttccaaaag
aagggtcaaccaaaacctaaagatgacaaacaacgaactattgttatcatggacgaagtt
gatggtatgtcgagtggtgatagaggtggagttgttgagcttgttcaaattatcaaacaa
actcgtgtgcctgtcatttgtattgccaatgatagatctaaaatctccttgaaaactctc
attactcactgtttggatctcaaatttagcagacctagcaaggctacaattaccaaaaaa
ttattggaagtctgtaagaaggaaaatctcagcattgacaataatgctttggaatatatg
gttgaatctctgaacaatgatatcagaagtgtgttgaataatctccaactcatcaataga
tacagtgctaaagatcatattggctatttagacgccaagagtagtgacttgacaaaaacc
agctcaacagacggtatttttgatgttgtaaaggatgtacttgggcaaaacagcaaaaag
tacaatgaaagacttgaagacttttactttgatccaatgcttgtacctctgttcgttgaa
cagaactatattaatataaggccacctggagatgataaggagagaattcaaagaatttca
tatgcatctgattccatttctatgggtgatattgttaattccaagattagaaaggaaatg
tcatttggtctcatgaattctcatgcattctacagtaccatgtatcctgcttactttatt
cgaggttctttccaagcattgagaggttatgacaagtattatcaattcccagccgttttg
ggtaaaggaagtacaacaacaaagaactataatgctcttaagactattcaaaagactaca
tcactcaaagctagtgccgacactttggaaatgttagactaccttccacttctttctaaa
actcttctcaatcctcttttgggtggagacaaagatgttcaggaaacaattgaagcaatg
gatgaatatcaaatttctcgtgatgatttagagtttatgtgtgaattatcaacatttaag
ggaaagaattcatctgaccaaaataaggattggttctctgagattgatactaaaaccaag
acagctcttactagacaatataacaaagctcacaagggatttaacaaggttagtgcagca
gctgccctctcaaaggttgaagacgaggaaaatcctgaagcagaggaagaggacgaagaa
gaagatttaaaggctgataagtttgttaccaagatgaagaatattgccaaacttgaagca
tttgaaaagaaacgagaaaaggctgaaaaagctgaaaagaagtcaaccaaaaagacaacc
aagaaggagacaacaaagaaagagtcaaccaaaaaagagtcaactagcaaaaaggaagtt
aaaaaagagactgaaaaaaagccacttgtgcttaaaaagaaataa
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