Naegleria gruberi: NAEGRDRAFT_69090
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Entry
NAEGRDRAFT_69090 CDS
T01241
Name
(RefSeq) PRP19/PSO4 pre-mRNA processing factor
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
ngr
Naegleria gruberi
Pathway
ngr03040
Spliceosome
ngr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NAEGRDRAFT_69090
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
NAEGRDRAFT_69090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngr03041
]
NAEGRDRAFT_69090
04121 Ubiquitin system [BR:
ngr04121
]
NAEGRDRAFT_69090
03400 DNA repair and recombination proteins [BR:
ngr03400
]
NAEGRDRAFT_69090
Enzymes [BR:
ngr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
NAEGRDRAFT_69090
Spliceosome [BR:
ngr03041
]
Complex B
Other components
Prp19 complex
NAEGRDRAFT_69090
Complex C
Prp19-CDC5 complex
NAEGRDRAFT_69090
Ubiquitin system [BR:
ngr04121
]
Ubiquitin ligases (E3)
U-box type E3
NAEGRDRAFT_69090
DNA repair and recombination proteins [BR:
ngr03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
NAEGRDRAFT_69090
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
Prp19
Beta-prop_WDR3_1st
WD40
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_1st
WDR55
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
WD40_Gbeta
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_Vps41
Beta-prop_CAF1B_HIR1
Beta-prop_Aladin
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_HPS5
WD40_RFWD3
zf-Nse
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_ACSF4
Beta-prop_VPS8
Beta-prop_RIG_2nd
Beta-prop_SPT8
Cytochrom_D1
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_WDR41
Motif
Other DBs
NCBI-GeneID:
8854495
NCBI-ProteinID:
XP_002675720
JGI:
Naegr1_69090
UniProt:
D2VJM3
LinkDB
All DBs
AA seq
728 aa
AA seq
DB search
MYCNTPLHPVISKKTGHLFEKSLILKYIEEHGKCPITGQDLTPNDLIDVIYKKGTESSVK
PSQAIASIPSMLQTFQNEWDSVMLETFTLRQQLDKSRKELSHSLYQHDAACRVIARLMKD
NDDTKSILRKNQNNMEDETSNTLSETVSERLTNTAEILSSNRKQRTISPSLKSPEEMSNS
NTRLLNSEYRLHQGKGIQSIDVLNSLILTGGRDGSISVFDKQYNTCIGELNSNSGPVNCA
IFHNTPEFAFSSHNRDVKIWSLKDSTCLHTMEKLHLERVTGLALHQSGHYFLTSSLDQTW
SFCEIETGTSLLKSSNDESGYTCIQFHPDGLLFGTGLQNNAVKIWDVKSQQVAATLQGHS
GEVTSLSFSENGYYLASSSKDKTVRIWDLRKVVPLHTLQFNSPVSNASFDYSGIYLGATC
TDGTVGVYQAKVWTELINTTVPNTCSPSSIRFGPNATEKLVSDETEDPSSYKQDLLELDS
RFYINSFRLRAAGELAKFAAKFGLSETWSDSTQLDELLCSIGTFRQDSTIILTQENSDEV
EEYVEFPNLIELGEAYQSVAEYTFTFIHPLLIAELSAHFEHQNSIPIELLEKVFENEYEE
YVRPKKLRKPNSNEESIDGIREWLSHNDEYVFFTNILLYYNTPERVFSLLEKPKIGKEKV
KNILQPLLMKFEDIADEYWILIMEFIEDPFSLTRFGMAHSKFYNILCKNRKEWYAEFKRN
IGLFSYLS
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgtattgcaatacaccacttcatcctgtaatttctaaaaagactggacacttgtttgaa
aagagtttgatcttaaagtatattgaagaacacggaaagtgtccaattactggacaagat
ttaactcctaatgatttaattgatgtaatttataagaaaggcactgaatcatcggtgaag
cctagtcaagctattgccagtattccaagcatgttacaaacattccaaaatgaatgggac
tctgtaatgttggaaacttttactttgagacaacaattggataaatcaagaaaggaactt
tcacactcactttatcaacatgatgctgcttgcagagttattgcaagattaatgaaggat
aatgatgacacaaagagtattctcagaaaaaatcaaaataatatggaagatgaaacttct
aatactctctcagagactgtttcagaaagacttacaaatactgcagaaattctctcatca
aatagaaaacaaagaactatttcaccatctcttaaatcaccagaggaaatgtcaaattcc
aacactcgtttgttaaatagtgaatacagactccatcaaggaaagggtattcaatccatt
gacgttttaaattcattgattttaactggaggtagagatggatcaatttcagtttttgat
aagcaatataatacttgtattggagagttgaattctaattctggacctgtaaattgtgcc
attttccacaatactcctgaatttgccttttcaagtcacaatagagatgttaaaatatgg
tctcttaaggattctacctgtcttcacactatggaaaaacttcatttggaacgtgttact
ggacttgccttgcatcaatctggtcactacttcttgacatcatctctcgatcagacatgg
tctttctgtgaaattgaaactggaactagtttgttaaagagtagcaatgatgaatcagga
tatacttgtattcaattccatccagatggtttattatttggtactggtcttcaaaataat
gctgtaaagatttgggacgtcaagtctcaacaagtagctgctacattacaaggacactct
ggagaagttacctcactttcattctctgaaaatggttactatctcgcttcttcatcaaag
gataagactgttcgtatttgggatttaagaaaagtggtacctctgcacacattgcaattc
aattcaccagttagcaatgcttccttcgactattctggtatttatctaggtgcaacctgt
actgatggtactgttggagtttatcaagctaaggtttggactgaactcattaatacaaca
gttccaaacacctgttctccatcaagcattcgctttggacctaatgctactgagaaactt
gtctccgatgaaacagaagatccatcttcctacaaacaagatttgttagaattagatagc
agattttatattaacagtttccgcttgagagctgccggtgaattagcaaaatttgcagct
aaattcggattatcagaaacttggtctgattcaacccaattagatgaattgttgtgtagt
attggcacatttagacaagacagtacaatcatactaactcaggaaaactctgatgaagtg
gaggaatatgttgaatttcctaacttgattgagttgggagaagcttaccaatcagttgca
gagtacactttcacattcattcatccacttttgattgcagaattgagtgctcatttcgaa
catcaaaatagcattcctattgaattattggaaaaagtattcgaaaatgaatatgaagaa
tatgttcgtccaaagaaattgagaaaaccaaattccaatgaagaaagcatcgatggaata
agagaatggttaagccataatgatgaatatgtattcttcaccaatatcctattgtattac
aatacacctgaacgtgtcttttctcttttggaaaaaccaaaaattggaaaggaaaaagtg
aaaaatattttacaaccactgctgatgaaatttgaagatattgcagatgaatattggatt
ttaattatggaatttattgaagatccattttcattgacaagatttggaatggctcattcg
aaattctacaatattctttgtaagaatcgaaaagaatggtatgcagaattcaaaagaaat
attggattattctcatacctgagctaa
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integrated database retrieval system
