KEGG   Naegleria gruberi: NAEGRDRAFT_74650
Entry
NAEGRDRAFT_74650  CDS       T01241                                 
Name
(RefSeq) hypothetical protein
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
ngr  Naegleria gruberi
Pathway
ngr03020  RNA polymerase
ngr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ngr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NAEGRDRAFT_74650
  09124 Replication and repair
   03420 Nucleotide excision repair
    NAEGRDRAFT_74650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ngr03021]
    NAEGRDRAFT_74650
   03019 Messenger RNA biogenesis [BR:ngr03019]
    NAEGRDRAFT_74650
   03400 DNA repair and recombination proteins [BR:ngr03400]
    NAEGRDRAFT_74650
Transcription machinery [BR:ngr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     NAEGRDRAFT_74650
Messenger RNA biogenesis [BR:ngr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     NAEGRDRAFT_74650
DNA repair and recombination proteins [BR:ngr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      NAEGRDRAFT_74650
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 8857452
NCBI-ProteinID: XP_002670386
JGI: Naegr1_74650
LinkDB
AA seq 161 aa
MFFLVDLDKNIRLHPKFFGPDLTRTLRARLQNDVEGQCTGRDGYIVSVTEITKIGQGKIG
ESSGYATFPINYKAIVFKPFKGEVCDAVVYKVTPVGFFASVGPLNVFVSSHAVPDDMKYD
GHHTPPRFISEEAQVCIFTTIQSFNMQQQYLNFHHESSSSI
NT seq 486 nt   +upstreamnt  +downstreamnt
atgttcttcttggtggatttggacaagaatattcgtttgcatcctaaattctttggtcct
gatcttactcgtacacttcgtgctcgtcttcaaaacgacgttgaaggacaatgtacagga
agagatggatatattgtttctgttacagaaatcacaaaaattggacaaggtaaaattgga
gaatcatcaggatatgctacattccctattaattataaagctatagtattcaagcctttc
aaaggagaagtttgtgatgctgttgtatataaagtaacaccagttggattttttgcaagt
gttggtccattgaatgtttttgttagtagtcatgctgttccagatgatatgaagtatgat
ggccatcatactcctccaagatttatttcggaagaagctcaagtatgtattttcacaaca
attcaatcttttaacatgcaacaacaatacctaaattttcatcacgaatcttcatcatca
atttga

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