Naegleria gruberi: NAEGRDRAFT_78068
Help
Entry
NAEGRDRAFT_78068 CDS
T01241
Name
(RefSeq) DNA mismatch repair protein msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
ngr
Naegleria gruberi
Pathway
ngr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
NAEGRDRAFT_78068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngr03400
]
NAEGRDRAFT_78068
DNA repair and recombination proteins [BR:
ngr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
NAEGRDRAFT_78068
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
UPF0489
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
8852289
NCBI-ProteinID:
XP_002682522
JGI:
Naegr1_78068
UniProt:
D2V0S1
LinkDB
All DBs
AA seq
1998 aa
AA seq
DB search
MAKKKKQESSSPATKPSESSSLSKTLLIVSFLILILSIALLYKANLFSPDGGSSTILSKL
FSLGHGSARFYPTLGAKSKFPAPITSTPAYLNYAKKLNETIGKDKKKKNRVHIGIFDEHN
YALFFWVRAHKLGLIPRIKYDGEKANSNEYNLQYQGLPLLHIDSHSDAQIPQHYFNFKKF
RDIIENPSNYERVQYVNSKNQTKFRHVFNDTHLSELLEATSIGDFIPVGQYLGLVSPKVV
WLQSDFEGGGYNFGQGRFNAELGVRKSAVLKGSQSIEDIRQTDTVDPETTYLCYRKSDGY
KWTRKINRNGKKTVTKRLGNISQIAKAGVCSPYEEFNQPEKETIPIQWDVFRMKSLFNRT
TGEINKNAQFFNSTSYLLDIDLDYFSTDDEMLFNMVPRKQYAPLFKVFAEMVEEDKILCY
GKNVLPETKHMNNTEEIKKFNRKRMSDFLHEMFFKGVLFDENAMFTKQPVQSIRFDEESV
FTKELLNMWCEGKLFALQHLYELSKFIVLFLESINYFHLSLLQMNYRFPTVEKYCNVNQM
FGVCPSGLPSKYLTKDQIVDEMNKLERIIVAQEKLPAYVTISRSVDAYLPRVLHHFIETE
TLKMLDRAFHTISPNVTVDTKYFAGYDATSSVYENDARIEFFDRTEREASFIRKALKDMN
EPVGIFIPAVNYKLFNMALMTEFLESHGISMDDFVQDLSLLKEFLKWKMTHARGISFSGL
KSQKPQNVPPVGYTVPQKRPRLCMVIVKDNSTENESQFDNVNCWVKQLNETFDRELVLDV
NIINANTENVTYVEKLNLVKDHYSNLFPTYFKSLNLTLDEKKPLTIIVDPSCITFDLSIQ
VKNKKRKKYINLEDSPLHQKYSGKEKISFSQSIDEVISHLKSLAKDGTEVISKEENKIED
KMAYIEAQKEKFNKQKVKHMYSLISLMAERSNTRCLKKKAKQSKQQKKGASSSASPSVPS
SVGGSKKRKKDESSDEDEDFEFIDEEEEKPKKKQPAKKTTAKKKKKKESDDEEELEENTI
RTSKFTGIKKKKEKEKDRFPFLTNRLDDKRRPESDPDFDKSTLYISTGDMSNLTPMEQQY
WATKKNHMDKLVFFKKGKFYELYEEDADIAKKEFDLKITERINMRMAGVPESSFLNYAKK
FISLGYDCLRVEQTETVEERNERKKEKKTASSCVGREICDITTIATITDLDFISDNGNQY
LLCVKEDIMHARYGITFLDISMDAFYIGFIEDDTHRNQFNTLIHTINPSEIIIEKGQTSV
QTKKNIDNKRVVIREKKTCNELAQKEFTGFPTADVTKYFLEDLPHISEDAIVKQFLDNDL
VMSSFGAALFYLKYLRKEDVLLSKTIKFSLYDGKMDTGHLILDGQTLTNLDVKVNSNTGT
KEGTLLSLVDNTVTAMGRRMLENWLTRPLKNSEEINDRYDAIEDIMSIIEEPQSIRDQLS
NIKDLERCLHCLYRESRKVQKEIAFDTSTSKRRVKPYLHALESLRAGVIIVQGLQKYAES
VNSSILKRVINIDNLDEIDNVLSTFENQIDQQKALSEGIVERIDGSLGPEYEKYLEEVAE
IDKEVQDFIAKVKEEVPSAKMKIDKGNTKIVKQWTIETEVKVELDNMPDGFKSEKKNQKT
RKWSHPFLDKKLTESKLRQTKMDDIRENQYREILNEFSTYDQYWKTIMRSISELDCLLSL
YTTSSQEGYCRPVILPFKNKPVLKVTKMRHPTVRTTSGFIPNDIFMGADDATTLLVTGPN
MGGKSTILRSSCIAVIMAQIGCFVPAEACELTLIDRIFTRIGANDRILAGESTFMVELLE
TSNIVRNATSRSLVILDELGRGTSTHDGYAIANSVAQYMADVVGCLCMFSTHYYELTEEL
KHHPSIDFYQMECEVEKDETGRITDVIFLYQFARGVCEKSYGIQVAKKAGVPQSIVDRAS
VVAEEFEKIMRVHRPITYDNLKPEQMEYYENLVATALDISERNEMDESEKEMIVGILAEY
QQKILSSYSDFANLLEHN
NT seq
5997 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaagaaaaagcaggaatcttcttcacctgccactaaaccatcagaatcatct
tcactcagcaagacccttctcattgtttccttccttatcctaatcctttccattgcactt
ctctacaaggcgaatctgttttctcctgatggtggtagtagtacaatactgagtaaactc
ttttctcttggacatggaagtgctcgtttctatccaactctcggagcaaagagtaaattt
ccagctccaatcacttcaactcctgcctatttgaattatgcaaagaaattgaacgaaact
attggaaaggacaagaaaaagaagaatagggttcatattggaatttttgatgagcacaat
tatgcattgtttttctgggtgagagctcacaagttgggtctcattcctagaattaaatat
gatggtgagaaggcaaattctaatgaatataatttacaatatcaaggattacctttgctt
catattgattctcactctgatgctcaaattccacaacattatttcaattttaagaaattt
agagatattattgaaaatccttcaaattatgaaagagtgcaatatgttaattcaaagaat
caaaccaaatttagacatgtctttaatgatacacatttgagtgaattattggaagctaca
tctattggagatttcattcctgttggacaatatttgggattggttagtccaaaggtagta
tggcttcaaagtgactttgagggaggtggatacaattttggacaaggtcgtttcaatgcc
gagttgggagtgagaaagtcagcagttttgaagggatctcaatctattgaagatattaga
caaacagacacagttgacccagaaactacctacttgtgttatagaaaatcagatgggtac
aaatggacaagaaaaatcaatagaaatggcaaaaaaactgtaacaaagagattgggcaat
atttcacaaattgctaaagcaggtgtatgctctccctatgaagaattcaatcaaccagag
aaggaaactattccaattcaatgggatgtatttagaatgaaatctctattcaatagaaca
actggagaaatcaacaagaatgctcaatttttcaactctacatcttatttgcttgacatt
gatttggactacttttcaacagatgatgaaatgctttttaacatggttccaagaaaacaa
tacgctcccctgttcaaagtatttgcagaaatggtagaggaagataagattttgtgctat
ggtaagaatgtattgccagaaaccaagcatatgaacaatacagaggaaatcaaaaagttt
aacagaaagagaatgtcagacttcttgcatgaaatgtttttcaaaggagtcttgtttgat
gagaatgccatgttcacaaaacaacctgttcagtcaataagattcgatgaagagtcagta
tttacaaaggaattgttaaatatgtggtgcgagggaaagctgtttgctttacaacatctc
tatgagttatccaagtttattgtcttgtttttggagagtattaattatttccatttatct
ttattacaaatgaattatagattcccaacagttgaaaagtattgtaatgtcaatcaaatg
tttggagtttgtccaagtggtttaccttccaagtacttgacaaaggatcaaatcgtagat
gaaatgaacaagcttgaaagaatcattgtcgctcaagaaaaattaccggcctatgtcaca
atttccagatcagtcgatgcctatcttccaagagtgttgcatcactttatcgagactgaa
acattgaaaatgttagacagagcattccataccatttcaccaaatgttactgtcgatacg
aaatactttgctggttatgatgcaacaagttctgtatatgaaaatgatgcaagaatcgag
tttttcgacaggactgaaagagaagcttcatttatccgtaaggctctcaaggatatgaat
gagccagttggaattttcattcctgctgtaaactacaagttattcaatatggcattaatg
actgaatttttggaatctcatggtattagtatggatgactttgtacaggatctttcactt
ttgaaggaatttttaaagtggaagatgactcacgctcgtggcatatcattttctggattg
aaatctcaaaagcctcaaaacgtaccaccagttggctatacagtacctcaaaagagacca
agattgtgtatggttattgtaaaggacaactctacagaaaacgaatcacaatttgataat
gtgaattgttgggtaaaacaattgaatgaaacattcgatagagagttggttctcgatgta
aatatcattaatgccaacactgagaatgtcacctatgttgaaaaattgaatctagttaag
gatcactatagcaatttattcccaacctactttaaatcactcaatctcacacttgatgag
aagaaaccattgaccatcattgttgatccgtcatgcattacattcgacttgtccattcaa
gtgaagaataagaagaggaaaaagtacattaatttggaagattcaccacttcatcaaaaa
tattctggaaaggaaaagatttcattttctcaatctattgatgaagtaatctctcacttg
aaatccctcgcaaaggatggtacagaagtgatatccaaagaggaaaataagattgaggac
aagatggcctacattgaagctcaaaaagaaaaattcaacaaacaaaaggtcaaacacatg
tactctctcatttcattgatggcagaacgatccaatactcgttgtctcaagaaaaaggca
aagcaaagcaagcaacaaaagaagggtgcttcatcgagcgcatctccttctgtaccatcg
tcggttggtggtagcaagaagagaaaaaaggatgaatcatccgatgaggatgaagacttt
gaattcattgatgaagaagaggaaaaaccaaagaaaaagcaaccagcaaaaaagactaca
gcaaaaaagaagaaaaagaaagaatccgatgatgaggaagaattggaggaaaatactatt
agaacttcaaaatttactggtattaaaaagaagaaagaaaaagaaaaggatagatttcca
tttcttaccaatagattagatgataagagaaggccagaaagtgatcctgattttgacaag
tcaactttgtacatttcaactggtgatatgagtaatttaacaccaatggaacaacagtac
tgggcaacaaagaaaaaccatatggacaaacttgtgtttttcaaaaagggaaaattctat
gaattgtatgaggaagatgctgatatagcaaagaaggagtttgatttaaagataactgaa
agaattaacatgagaatggctggtgtaccagaaagttcctttctgaattatgctaaaaag
tttatcagtttaggatatgattgcttgcgtgttgaacaaacagaaacagttgaagaaaga
aacgaaagaaaaaaggaaaagaagactgcatccagttgtgttggaagagaaatttgtgac
attaccactattgctactattaccgatttggatttcatatcagacaacggtaatcagtac
ttgctatgtgtaaaggaggacattatgcatgctagatacggtattacattcttggacatt
tctatggatgctttctatattggattcattgaagatgacactcacagaaatcaattcaat
acactcattcacaccatcaacccaagcgaaataattattgaaaaggggcaaacttctgtt
caaactaaaaagaatattgataacaaaagggttgtgattagagaaaagaagacttgtaat
gagcttgctcaaaaagaattcactggttttccaacagcagatgtaacaaaatattttctt
gaagatctgcctcatatttcagaggatgcaattgttaaacaattcttggataatgacctt
gttatgtctagttttggtgcggccttattttacttgaaatacttgagaaaagaagatgta
cttttatctaaaacgatcaaattttcattatatgacgggaaaatggatacaggtcatttg
attctagatggacaaactctcactaatttggatgtcaaagtaaattctaatactggaaca
aaggaaggtactttattgagtttggttgacaatacagtcacagctatgggaagaagaatg
ttggaaaattggttaacaagacctttgaagaattctgaagaaattaatgatagatatgat
gctattgaggatataatgtctataatagaagaacctcaatctattagagatcaactctca
aatataaaggatctggaaagatgtcttcattgtttgtatagagaatccagaaaggtacaa
aaagaaattgcttttgataccagtacaagcaaaagaagggtaaaaccatatttacacgca
ttagagagtttgagagctggagtaatcattgttcaaggattgcaaaagtatgcagaatct
gtgaattctagcattttgaaaagagtaattaatattgataaccttgatgaaattgataat
gttttaagtacttttgaaaaccaaattgatcagcaaaaggccttgtcggagggtattgta
gaacgtatagatggttctttgggtccagaatatgaaaagtatttagaagaggttgcagag
attgacaaggaagttcaggattttattgcaaaagttaaagaagaggttccctctgccaaa
atgaaaattgataaaggaaatactaaaatagttaaacaatggacgattgaaactgaggta
aaggttgaacttgataatatgccggatggattcaagagtgaaaagaagaaccaaaaaact
cgtaaatggagccatccattccttgataagaaattaacagaaagcaaactccgtcaaaca
aagatggatgatattagagagaaccagtacagagaaatcctcaatgaattttcaacatac
gaccaatattggaagactattatgagatcaatttcagaattagattgtctcctctctctt
tatacaacaagtagtcaagagggctattgtagaccagtgattcttccttttaaaaacaaa
ccagtactaaaagtaactaagatgagacacccaactgttagaacaaccagtggatttatt
cctaatgacatttttatgggggctgacgatgcaaccactttgctggttactggaccaaat
atgggtggtaaatcaacaattctcagatcatcatgtattgctgttattatggcacaaatt
ggttgctttgttccagcagaggcttgtgaattgactcttattgatagaatattcacaaga
attggtgctaatgacagaattcttgctggtgaatcaacatttatggttgaattattggaa
acttccaatattgttagaaatgcaacttctcgttctcttgtcattctagatgaattggga
agaggtacatctacacacgatggttatgcaattgctaattctgttgctcagtacatggct
gatgttgttggatgtttgtgtatgtttagcactcactattatgagctcactgaagagttg
aagcatcatccaagtattgacttttatcaaatggaatgcgaagttgaaaaggacgaaaca
ggaagaattactgatgttattttcctttaccaatttgcaagaggtgtttgcgaaaagagt
tatggtattcaagttgccaagaaagcaggtgttccacaaagtattgtagatagggcttct
gttgtagctgaagaatttgaaaaaataatgagagtccatagaccaattacatatgataat
ctcaaacctgagcaaatggaatattatgaaaaccttgttgcaacagcacttgatatttct
gaaagaaatgaaatggatgaaagcgaaaaggaaatgattgttggaatactcgcagaatat
caacaaaagattctatcatcctactctgactttgcaaacctactcgagcataattaa
DBGET
integrated database retrieval system
