Naegleria gruberi: NAEGRDRAFT_78352
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Entry
NAEGRDRAFT_78352 CDS
T01241
Name
(RefSeq) CCR4-Not complex component
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ngr
Naegleria gruberi
Pathway
ngr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NAEGRDRAFT_78352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngr03019
]
NAEGRDRAFT_78352
Messenger RNA biogenesis [BR:
ngr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
NAEGRDRAFT_78352
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
NAEGRDRAFT_78352
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
OS-D
bCoV_NSP1
Motif
Other DBs
NCBI-GeneID:
8861526
NCBI-ProteinID:
XP_002681283
JGI:
Naegr1_78352
UniProt:
D2V2Z7
LinkDB
All DBs
AA seq
1913 aa
AA seq
DB search
MSTTDIFNKLTLQFPHLTEQDVGELIGMMVMNHTGLQARTEIPSFMQSIGIAKYDFKENV
SSWNLDNFVSVMKNKDLNWKQVVACLDYPNFKFRDQKGLSMVVTLYKKLTGEKLPLDVFV
CRKWNNTEAQLSFILLALDAPPDIIDFTSDKLRHVDISFLPSHKNQNTTWGTIDLIETLI
NLADNENIVAIRKVFEAPIKQCPEQFLLALAQSKPTNAFLQQEFISQIVPIFVKPHKNSF
PVLHKLCEVNQSLLIASLSDSYRKDATQLRRILDIAQELKILDAILESRPFRFAIEIAVL
ASKRDHLNLELWLLNNLERYTSEFAQEVISYLTDGITSWKEKNSQSSFTVDSAKIIFKCL
DKARSIIVNEVLEQAYQVYQTLDDSIKKEISSSEFQLSPEVEQKTNQFFLSMFRAEITVE
AGIEKLKDLKLSKSKADQEMFACVIHNLFDEYRFFNLYPDDVLGVMAKLYGYIIQHNIIV
AKTLKYGLICVLTALSSTEVKMFQFGLIALSLFKTRVSEWPQFCAHLRTKVPQVFTHIPD
LAQHAAKGFSMVDSMLPTDQMTIQSPTLPPTSLSPQPMIQPNTGMSSPLNAGYSQMPISP
PVSASQAGISMTSSPPPPVQQPTKEDPQTPTKIKKEEEKDRASPGIGFQLDISTLTNHAN
TQEIEKPDNDTADKIFFVINNLSLTNMDKCAELKQLLAPNLYPYFSRYIVVNRASLEPNF
HAVYSKMLATLQIESLDKCILKQTYEAISALLDSERITTSLSERSLLKNLGSWLGLHTVA
KNKPVLQKDLDIKTLLFNAYEKGRLIAVIPFVCKILNNCSKSKVFVPPNPWVMGIVSLLV
EIHSIPELKLNLKFEVEMLCKTLKLTLSQVEQQNKEKGVQLLAGKVQVKKNNPDINAQTG
AEQPTTNAPTTVPTTTGTTSTNKAEKLFNILKISDASVVIADLQDQVKISDSLTIFKDQP
ELRKLVVIALDQTIREIIAPVVKRAVTISCRTTGELIIKDFIAEPDYQKLARSANLMVSN
LAAKLAKVSCKDLLKSSLQGHLKRLLETACINPTEKVKTLIEQVVNVVSNDNINVGTAYV
EQAARDKSMIDVAETLQSEIELRKGHQNGAIGPWTNYTMPPAIQRLPDLLAPKNGLHRNH
LQVYEDFERKIHSEKPREDMLPINVAIDQGKVTLAKIFDFINQAKKQVPSLLFIPPQSEL
YTNIAKLRSVLTQSVQGGETAEELVSDLFNKLYENDLPIVKETCVLLMMIIRDMESESSI
QQVTNLWKGMKNQQKLEKDITTALIRADLLDLPSVDNELVSLLADQSCANLTLSLLLHLI
QKLVSHKSTIMLNDLPKCSSFIQNHLKNLPESNHIALMLDQALKTATALPENTLTIMFNA
SSDFESQDRFMMRDQLTKKLLAWVHLFDAPVNPGFLGIDLRSTSASLYQLINENKEILLA
ELKEISKNDKFFEELILNMLQITLEYYYKCITPVPGQQQFKFADAFSELIGNLIFGESYR
AKIVTRFHITLTTIKQFIIRDHDLQQTNFNQRIYLRLLSNLLTQINTFLPQPVIQSADYQ
IDERIIELNVELLSAFADALSELEPSAYPGFVFGWLDLIAHRHFMPKLLSPVGKKGMPKF
HALVMHLFKFLEPYLRNISLSNPVKLVYRASLKILLVLLHDFPEFLCDYHFSLCNVIPST
CIQMRNLILSAFPRHMKLPDPFTQNLKVDLLPEINEPPNILSDYMSYFTKDLNADILDSF
VLTRDVNILNQLSAKLKLSPQEAEEVGTAYNVPLINAIVIYTGIIATRQQSNPVINTPAT
DILRKLIFELDSEGRYLVLNSLANQLRYPNIHTHFFSCVILNLFLETVDKEFIQEQITRV
LIERLIASRPHPWGLLITFIELVKNSRYKFWEKPFIHCSGDIDTMFQNVRFSL
NT seq
5742 nt
NT seq
+upstream
nt +downstream
nt
atgtctacaacggatatattcaacaaacttacattacaatttcctcacttgactgagcaa
gatgtgggtgaattaattggtatgatggtaatgaatcatacaggattacaagcaagaaca
gaaattccatcatttatgcaatctattggtattgcaaagtatgactttaaagaaaatgta
tcatcatggaatttagataattttgtttccgtgatgaagaacaaggacttgaactggaaa
caagtagtagcctgtttagattacccaaactttaaattcagagatcaaaaaggattatca
atggttgtaaccttatacaaaaagttaacaggagaaaagctcccactcgatgtttttgtt
tgtagaaagtggaacaatactgaagcacaattatcttttatccttcttgcccttgatgca
cctcctgatattatcgactttacatcagacaagcttcgacatgtagatatttccttcctt
ccttcacacaaaaaccaaaacacaacctggggtacaattgatttgatagaaactcttatc
aatttggctgataatgaaaatattgttgccattagaaaagtttttgaagcaccaatcaaa
caatgtcctgaacaatttttacttgctttggcacagtcaaaacctaccaatgctttctta
caacaagaattcatctctcaaattgtaccaatctttgtcaaaccacacaaaaattctttc
cctgttcttcacaagttgtgtgaagtaaatcaatctcttctcattgcttcactctctgat
tcttacagaaaggatgcaacacaattgagaagaattttagatattgctcaagagttgaaa
attcttgatgcaatccttgaatccagaccattccgttttgctattgaaattgctgtatta
gcatcaaagagagatcacctcaacttggaattatggttattaaataacttggagaggtac
actagtgaatttgctcaagaggtaatttcatatttaacagacggtattacatcatggaaa
gaaaagaattcacaatcttctttcactgttgattctgctaaaatcattttcaaatgtttg
gataaggctagatctatcattgttaatgaagtacttgaacaagcttaccaagtttatcaa
acacttgatgatagtattaagaaggaaatttcatcatcagaattccaactctcaccagaa
gttgaacaaaaaaccaatcaattcttcctctccatgttccgtgcagagattacagttgaa
gctggtattgaaaaattgaaagatttgaaactttcaaagagtaaggctgaccaagaaatg
tttgcctgtgttattcacaacttatttgatgaatatcgtttctttaacttgtatcctgat
gatgttttgggagtaatggccaaattatatggttacattattcaacataatattattgtt
gctaaaactttaaagtatggcttgatttgtgtcttgactgccttgtcaagtacagaagtt
aaaatgttccaatttggtcttattgctctctcactcttcaagactagagtttccgagtgg
ccacaattctgtgctcacttgagaacaaaggtaccacaagtttttactcacattccagac
ttggctcaacatgctgcaaagggctttagtatggttgattcaatgctaccaacagatcaa
atgaccattcaatctccaacacttcctcctacctctctttctccacaaccaatgatacaa
ccaaatactggtatgtcttctccactcaatgctggttattctcaaatgccaatttctcca
ccagtttctgcatcacaagctggtatttcaatgacaagttctccacctccaccagtacaa
caaccaaccaaggaagatcctcaaactccaacaaagattaaaaaggaagaagaaaaagat
agagcctcaccaggcattggattccaattggatattagtactcttactaatcatgctaac
actcaagaaattgaaaaacctgacaatgacactgcagataagattttctttgtcattaac
aatctctctcttaccaatatggacaagtgtgcagaattgaaacaactcttggcacctaac
ctctatccatacttttctagatatattgttgttaatagagcaagtttggaacctaacttc
catgctgtttacagcaaaatgttggctactctccaaatagaatcattggataaatgtatc
ttgaaacagacttatgaagccatttctgccttgttagattctgaaagaattacaactagc
ttgtcagaaagatcactcctcaaaaatttgggaagttggctcggtttacacactgtagca
aagaacaaaccagttttacaaaaggatttagacattaagactctcttgttcaatgcttat
gaaaagggaaggctcattgctgttattccatttgtttgcaagattttgaacaattgttcc
aagtctaaagtttttgtaccaccaaatccttgggtcatgggtattgtttcattgctagtt
gagattcactccattcctgaattgaagcttaacttgaagtttgaagttgaaatgttgtgc
aagactctcaagctcacactctcacaagttgaacaacaaaacaaggagaagggtgtacaa
cttcttgcaggaaaggttcaagtcaagaagaataatccagatattaacgctcaaacagga
gctgaacaaccaactacaaatgctccaactacagtacctactactactggcacaacttca
accaacaaggctgaaaaattattcaacattctcaagatttcagatgccagtgtggtaatt
gctgatttacaagaccaagtcaagatttcagacagtcttaccatctttaaggatcaacca
gagttgagaaaacttgttgttattgcccttgatcaaacaattcgtgagattattgctcca
gttgtcaagagagcagttacaatttcttgtagaacaactggtgaattgatcattaaggac
tttattgccgaaccagattatcaaaaacttgctcgttctgccaacttgatggtttccaat
ctcgctgccaagcttgctaaggtatcatgcaaggatttactcaagtctagtttgcaaggt
catttgaagagacttttggaaacagcctgtattaatccaactgaaaaggtcaagacattg
atcgaacaagttgttaatgttgtcagtaatgataatattaatgttggtactgcctatgtt
gaacaggcagccagagacaagagtatgattgatgtagctgaaacacttcaatccgaaatt
gaactcagaaagggacaccaaaatggagctattggaccttggaccaactataccatgcca
ccagcaattcaaagacttcctgacttgttggctccaaagaatggactccacagaaatcat
ctccaagtttatgaagattttgaaagaaagattcactctgaaaaaccaagagaagatatg
ttaccaatcaatgtagctattgatcaaggaaaggtaacacttgccaagattttcgatttt
atcaaccaagctaagaagcaagttccttctctcttgtttattcctcctcaaagcgaactc
tacacaaacattgccaagctcagatccgtcttgacccaatctgtccaaggtggcgaaact
gctgaagagcttgtatctgatttgttcaacaagctttatgaaaatgatttacctattgtc
aaggagacttgtgttctcttgatgatgattatcagagatatggaatcagaatcctccatc
caacaagtcaccaatctttggaagggaatgaagaatcaacaaaagcttgaaaaggatatt
acaacagcattgattagagcagacttgttagatttaccaagtgtagataacgaattggtt
tccctcttggccgaccaatcttgtgctaacttgaccctttctttattattgcaccttatt
caaaagctcgtctctcataagagtactatcatgttgaatgacttaccaaagtgtagcagc
tttatccaaaatcatttgaagaaccttcctgaaagcaatcatattgctttaatgttagat
caagctttgaagactgcaactgctttacctgaaaatactttgactatcatgttcaatgct
tcctcagattttgaatcccaagatagattcatgatgagagatcaactcaccaagaagctt
ttggcttgggttcacttgtttgatgctccagttaatccaggattccttggtattgatttg
agaagcacatcagcatctctctaccaattgatcaatgaaaataaggaaattttattggct
gaattgaaggaaatttcaaagaatgataagttctttgaagaattaattttgaacatgctc
caaatcactttggaatactattacaagtgtattactccagttccaggtcaacaacaattc
aagtttgctgatgccttttctgaattgattggtaatttgatctttggtgaaagttatcgt
gccaagattgttactagattccacattactctcacaactatcaagcaattcatcattaga
gatcatgacctccaacaaaccaactttaatcaaagaatctacttgagattattgtccaac
cttctcactcaaatcaatacattcttgccacaacctgttatccaaagtgctgactatcaa
attgatgaaagaattattgaattgaatgttgaattattgagtgcctttgctgatgccttg
agtgaattggaaccatctgcctatcctggatttgtatttggttggttagatttgattgct
cacagacactttatgccaaaacttctgtcacctgtaggcaagaagggtatgccaaaattc
cacgctcttgttatgcacttgttcaagttcttggaaccatacttgagaaacatttccttg
agcaatccagtcaagctcgtctatagagcatcactcaagattttattggttctcttgcac
gacttcccagaattcttgtgtgactatcacttctctctctgcaatgttattccaagtact
tgcatccaaatgagaaacttgatcctctctgccttccctcgtcacatgaagcttccagac
ccattcactcaaaatctcaaggttgatttgcttccagaaattaatgaacctccaaatatc
ctcagtgactatatgtcctacttcaccaaggatttgaatgctgatattttggatagcttt
gttcttaccagagatgttaatattttgaatcaactttcagccaagttgaagctttctcct
caagaagctgaagaagtaggaacagcctacaatgtcccacttattaatgctattgtcatt
tacactggtatcattgctacaagacaacaaagtaatccagtcattaatactccagccact
gatattcttcgtaaattaattttcgaattggactctgagggacgttatttggttttgaac
tcacttgccaatcaattgagatatcctaacattcatactcacttctttagttgtgtaatt
ttgaacttgttccttgaaactgttgataaggaattcatccaagaacaaattaccagagtt
ctcattgaacgtttgattgccagtagaccacatccatggggcttgttgattaccttcatt
gaattagtcaaaaatagcagatacaagttctgggaaaagccattcattcactgctctggt
gatattgataccatgtttcaaaatgttagattttcactttaa
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