Naegleria gruberi: NAEGRDRAFT_78847
Help
Entry
NAEGRDRAFT_78847 CDS
T01241
Name
(RefSeq) ATP-dependent RNA helicase
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ngr
Naegleria gruberi
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngr03019
]
NAEGRDRAFT_78847
03041 Spliceosome [BR:
ngr03041
]
NAEGRDRAFT_78847
03036 Chromosome and associated proteins [BR:
ngr03036
]
NAEGRDRAFT_78847
Enzymes [BR:
ngr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NAEGRDRAFT_78847
Messenger RNA biogenesis [BR:
ngr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
NAEGRDRAFT_78847
mRNA cycle factors
Common to processing body (P body) and stress granule
NAEGRDRAFT_78847
Spliceosome [BR:
ngr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
NAEGRDRAFT_78847
Chromosome and associated proteins [BR:
ngr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
NAEGRDRAFT_78847
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
8848943
NCBI-ProteinID:
XP_002680035
JGI:
Naegr1_78847
UniProt:
D2V713
LinkDB
All DBs
AA seq
629 aa
AA seq
DB search
MSKYIPPHMRQKLLEQADSPPSSSSSSDKPFSQRQNSSSNGNGSAQQRKFTGDIFSSNNN
NNKPTNSRVAVDWSKSDDNDSFDNNRRSYDNRRSYDREERKPAFTDRSRDAYTREDVETE
ELFKSKSTGINFDAYEDIPVKVTGKDIIPPIAAFKEANLPPKLMQNIERAGFGKPTPVQK
HSIPIVLAGRDLLSCAQTGSGKTCAFLFPIISNLMTQPGYETVMPHPELMDTLVTCPSVL
IMAPTRELSTQIYDESRKFTYHTGRRTVVAYGGAAIQYQLKQLERGCDILVATPGRLVDL
IDRGSISLHNVQYLVLDEADRMLDMGFEPQIRYIVEKTGMPAPGQRITLMFSATFPKNIQ
TLARDFLHNNLNLTVGRVGSTHENILQKFVYCKDDEKRDLMLEAIASVETLTLVFVKTKK
EASILEYFLMKNGFKSSSIHGDKTQRERETALENFRRGITPILVATDVASRGLDINDVGH
VINYDLPENIEDYVHRIGRTGRAGNTGISTSFFTDKNNQIADDLITVLEEAKQEVPPFIV
EGRDKLRYAKGFRGGGSRGGRGGSSNFFGGGSRGGFGMANGRGGGSRGGFSSSRGGSSTR
GGRSFFDSNNNNRRSYHSDLGFEEDYEEE
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaatacattccccctcatatgagacaaaagcttttggaacaagctgactctcca
ccatcatcatcttcatcaagcgataaaccattctcacaaagacaaaacagcagcagtaat
ggtaatggttctgcccaacaaagaaaattcactggtgatatcttcagttccaacaataac
aacaacaaaccaaccaatagtagagtagctgttgattggagcaaatcggatgacaatgac
tcttttgacaacaatagaagaagctatgacaacagaagaagttatgatagagaagaaaga
aagccagccttcactgaccgtagtagagatgcttacaccagagaagatgttgaaactgaa
gaactcttcaagtctaagagtaccggtattaactttgatgcctatgaagacattccagtt
aaagtcactggtaaagatattattccaccaattgctgctttcaaggaagccaaccttcca
ccaaagttgatgcaaaacattgaaagagctggttttggtaaaccaacacctgtccaaaag
cacagtattcctatcgtccttgctggtagagatttattgtcttgtgcacaaacaggttct
ggtaagacttgcgctttcttgttccctatcatttctaatttgatgactcaacctggttac
gaaactgttatgcctcatcctgaattgatggatacccttgttacttgtccatctgttttg
attatggctccaactcgtgaattgagtactcaaatttatgatgaatctagaaagtttact
tatcacactggtagaagaactgtcgttgcttatggtggtgctgctattcaatatcaactt
aaacaattagaaagaggttgtgacattttggttgctacacctggtagattggttgacctc
attgacagaggttcaatttccctccacaatgttcaatacttggttttggacgaagccgat
agaatgttagatatgggtttcgaaccacaaattcgttatattgtagaaaagactggtatg
ccagctccaggccaacgtatcacacttatgttcagtgctactttcccaaagaatattcaa
actttggcccgtgactttttacacaacaatttgaacttgactgttggtagagtcggtagt
actcacgaaaatattttgcaaaagtttgtttattgcaaagacgacgagaaacgtgacttg
atgcttgaagctattgcatctgttgaaacacttacattggtatttgtcaagactaagaag
gaagctagtatcttggaatacttcttaatgaagaatggtttcaaatcatcatccattcac
ggagataaaacacaaagagaaagagaaacagctcttgaaaactttagaagaggtatcaca
ccaattttggtcgcaactgatgttgctagtagaggtttagatatcaacgatgtaggtcac
gttattaattatgatcttccagaaaatattgaagattatgttcacagaattggtagaact
ggtcgtgctggtaatactggtattagtactagtttctttactgataagaataatcaaatt
gctgatgaccttattactgtattagaagaagccaaacaagaagtcccaccattcattgtt
gaaggaagagataaactcagatatgccaagggattcagaggaggcggtagcagaggaggt
agaggaggttcctcaaacttctttggaggtggtagtagaggtggatttggcatggccaat
ggtagaggtggtggtagtagaggtggattcagtagtagtagaggtggaagctcaaccaga
ggtggtagatcattctttgattcaaacaataacaatagaagatcataccactctgatctt
ggctttgaagaagattatgaagaagagtaa
DBGET
integrated database retrieval system
