Naegleria gruberi: NAEGRDRAFT_79174
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Entry
NAEGRDRAFT_79174 CDS
T01241
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ngr
Naegleria gruberi
Pathway
ngr03008
Ribosome biogenesis in eukaryotes
ngr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
NAEGRDRAFT_79174
09123 Folding, sorting and degradation
03018 RNA degradation
NAEGRDRAFT_79174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngr03021
]
NAEGRDRAFT_79174
03019 Messenger RNA biogenesis [BR:
ngr03019
]
NAEGRDRAFT_79174
03009 Ribosome biogenesis [BR:
ngr03009
]
NAEGRDRAFT_79174
03016 Transfer RNA biogenesis [BR:
ngr03016
]
NAEGRDRAFT_79174
Transcription machinery [BR:
ngr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
NAEGRDRAFT_79174
Messenger RNA biogenesis [BR:
ngr03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
NAEGRDRAFT_79174
Ribosome biogenesis [BR:
ngr03009
]
Eukaryotic type
Pre-60S particles
RNases
NAEGRDRAFT_79174
Transfer RNA biogenesis [BR:
ngr03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
NAEGRDRAFT_79174
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
PITH
Motif
Other DBs
NCBI-GeneID:
8859363
NCBI-ProteinID:
XP_002679108
JGI:
Naegr1_79174
UniProt:
D2VA46
LinkDB
All DBs
AA seq
968 aa
AA seq
DB search
MGVPFLFSFLLSECPEMIKEIIPSSSASSSSNTTMTIDHLYLDMNGIIHTFKDTNLQTKL
LERLVSSSSSSSSSSSSNNEEVEIPMTMEKFIFSILLYLEEVIYRFRPSKTLMFALDGSA
PCAKINQQRERRWVSFNNHSGLPKRHHHHHQHGNHHGEQHDLHHGEENRKKKEDESLFDS
ISITSGTSFMKELSEHLQFFIKRKLQDDPNWRNIENIIFSDSSVFGEGEHKIMSHIRKVQ
QIPNRKSEKFMIYGMDSDLILLSLVTHEEDIYVLRDWMPSVSDSFNQVYSRWKVRRNFKK
KSNSSSRTVDKDRFDHKFHLVEISLVRKLIEKYMRQDLNSSIEFDLNRVIDDFILMLFVC
GNDFISSLPTLDIGKDENALGYLFKVYRTLFSTVFKGCYITNSSNPSELINLERLETFMQ
VIGRLEVRVLTNRLKKELQLINEKKSIEERTKAKEQASTTTTASEEESKPKAGHQNDNDL
EVVKSVVNTEHFKNLLAMIDLDKSLALNSDIEMKRFLMLSSITASVSGKFTSTYIAKSNI
DSEIMFDIPFKQPLSLCSLLIRINNSTPKDLEGISIKLFINQTVDFVSIDSHKINQEFKG
KDLIESIQASGCELKLKLSAFQNVSKLSIIIENQVNTSMQTSVEQLVVFGNVSTKTGSKL
VKVSKKNYKKKDYKQKTHNLSFEFHQEEERVKKFKVLTSSISLKKKEGMPPPPYVDMEKW
KVNYYSRKLNITYDSSSKGGGPQVRELVKEYLKAMYWTFYYYYFGVPSWEYSYNFHYAPA
ASDFVNLKELFTEITFHKGLPLNPIESLLAVIPLHKIKLVHECLHTDQEKQVLSQLISSH
TSTIYDLYHKKSNHTIEEDLDIDPNDEGLKNSLKDPFYHYSKMVVHLPFVNIENLRKACH
SLLISQQTRRENTKQPNNLYFKWMSDLEKGRLVKSTLSILPDIIDSQVNVVLEPFETDKN
EIIQININ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccgtttctcttttcatttctgttgagtgaatgtccagagatgatcaaggaa
atcattccatcctcatcagcatcctcttcatccaatacaacaatgactattgatcatctc
tatcttgatatgaatggaataatacataccttcaaggacactaatttacaaactaaatta
ttggaacgtctagtatcatcgtcctcttcttcatcctcttcatcttcatcaaataatgaa
gaagtggaaattccgatgacgatggaaaaattcatcttttccattctgttatatttggag
gaggtaatctatcggtttagaccatccaagacattgatgtttgctctcgatggatcagca
ccatgtgccaagattaatcagcaacgtgagagaagatgggtttcattcaataatcactct
ggcttaccaaagagacatcatcatcaccatcagcatggaaatcatcacggagaacaacat
gatcttcatcacggagaggaaaatagaaagaagaaggaggatgaatcattgtttgattca
atttccattacgagtggaactagttttatgaaggaattatctgaacatttgcagtttttc
atcaagaggaaattacaagatgatccaaattggagaaatattgagaatattatcttttca
gattcgagtgtgtttggtgagggagaacacaagattatgagtcatattagaaaagttcaa
caaattccaaatagaaagagtgaaaaattcatgatttatggtatggatagtgatttgata
ttactttctctagttactcatgaggaggatatttatgtgttaagagattggatgccttca
gtgtctgattcttttaatcaagtgtattctagatggaaagttagaagaaactttaaaaag
aaatcaaattcttcgagtagaacagttgacaaggacagatttgatcacaagtttcatttg
gtggaaatttctcttgttagaaaattaattgaaaaatatatgagacaagatttgaattct
agtattgaatttgatttgaatagagtgattgatgatttcattctcatgttgtttgtttgt
ggaaatgactttatttcttcacttccaactctagatattggaaaggacgaaaatgcactt
ggttacctcttcaaagtttatagaactctattttcaactgtctttaagggatgctacatt
accaactcttcaaatccttcagaactcatcaatttggaaagattagaaactttcatgcaa
gtaattggtcgtcttgaggtgagagttctcacaaacagactcaagaaggagcttcaattg
atcaatgagaagaaatcaatagaggagaggaccaaagctaaagagcaggccagtaccacc
acaacagcaagtgaagaagaaagcaaacctaaagccggtcaccaaaatgataatgatctc
gaggttgttaaatccgttgtcaatactgaacattttaaaaatctattggcaatgattgat
ttagacaagtcactcgctctaaattcagatattgaaatgaagaggttcctcatgctctct
tccatcactgctagcgtttcaggaaaattcacaagtacctatattgctaagagtaatatc
gactctgaaataatgttcgacattccatttaaacaacctctcagtctgtgcagcttacta
attcgtatcaataattctacaccaaaagatttggaaggaatttccatcaaattatttatt
aatcaaactgtagattttgtttcaatagactctcacaagataaatcaagaattcaaagga
aaagatttaatagaatccattcaagcaagtggatgtgaactcaaattgaaactcagtgct
ttccaaaatgtgagcaaactctcaattattattgagaatcaagtcaacacatccatgcaa
acctcagtagaacaattagtagtatttggaaatgtatcaaccaagactggaagcaaactt
gtaaaggtttcaaagaaaaattacaaaaagaaagattacaagcaaaagacacataatttg
agctttgaattccatcaagaggaggaaagagtcaagaaattcaaagtattgacatctagc
atttcactcaagaaaaaagaaggaatgccacctccaccctatgttgatatggaaaagtgg
aaagttaattattatagtagaaagctcaatatcacttatgatagctcctcaaaaggtgga
ggtcctcaagtgagagaacttgtcaaggaatacctcaaggcaatgtactggaccttttat
tattactactttggagtgccatcttgggaatattcctataacttccattatgctcctgca
gctagtgattttgtaaatttgaaagaactcttcacagaaataaccttccacaagggactt
cctctgaatccaattgaaagcttacttgcagtgatcccactccacaaaatcaaactcgtg
cacgagtgtcttcacaccgatcaggaaaaacaagttctctcccaattgatctcatctcac
acctcgacaatttatgatttgtaccataagaagagtaatcatacgattgaggaagattta
gatattgatccaaatgatgaaggattgaaaaattcattgaaagatccattctatcactat
tccaagatggttgttcatttaccatttgtaaatattgaaaatcttagaaaggcatgtcat
tctctattgatttcacaacaaacaagaagagaaaatacgaaacagccaaataatttatac
tttaaatggatgtcagatttggaaaagggaagattagtcaagtcaactctatcaatatta
ccagatattattgattcacaagtgaacgtcgttctggaacctttcgaaactgacaagaac
gaaatcatccaaattaatattaactaa
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