Naegleria gruberi: NAEGRDRAFT_79624
Help
Entry
NAEGRDRAFT_79624 CDS
T01241
Name
(RefSeq) dead box ATP-dependent RNA helicase
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ngr
Naegleria gruberi
Pathway
ngr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NAEGRDRAFT_79624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngr03019
]
NAEGRDRAFT_79624
03036 Chromosome and associated proteins [BR:
ngr03036
]
NAEGRDRAFT_79624
Enzymes [BR:
ngr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NAEGRDRAFT_79624
Messenger RNA biogenesis [BR:
ngr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
NAEGRDRAFT_79624
mRNA degradation factors
5'-3' decay
Decapping complex
NAEGRDRAFT_79624
Chromosome and associated proteins [BR:
ngr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
NAEGRDRAFT_79624
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
8848285
NCBI-ProteinID:
XP_002677495
JGI:
Naegr1_79624
UniProt:
D2VE83
LinkDB
All DBs
AA seq
618 aa
AA seq
DB search
MSTSTNRTHPVIQQPPSDQKSSSRPPSKQPGGSRGGKQTVYSSSNSTSSTNTTSSANTTN
NSTNNVASNGSGSNNNSRNRRYYNNNTTNNNSNSSASNLNNNNNNNQNRNNQNTNNNQSN
TNNNNNNRGGRFNSKQSYNHHRNLLENMNKVNENLHQEIPQQSTTTPSTSVPTTSPTTAP
KLSYSAIVGGQTVTDDINELDTHKPSNLAIAKELVQDELWKDKLSLPPRDDRMQTEDVTL
TKGSDFEEFGLKRELLMGIFEKGFERPSPIQEQTVPLALFGRDILARAKNGTGKTAAFII
PCLERVDTSKNQIQILILVPTRELALQTSHVCKEIGKYLNVEVMVTTGGTSLKDDIVRLY
KPVHILVGTPGRIIDLASKGVANLNNVSMLVMDEADKLLSPEFVPLIEKLISFVPPSRQI
LLFSATFPITVKDFRDKWLTKPYEINLMDELTLKGVTQYYAFVEERQKVHCLNTLFSKLQ
INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMPQDLRNRVFHDFRNGACRNLVSSDL
FTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINFVTYEDRFNLYKIEQEL
GTEIKPIPPTIDKNLYVA
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgagtacaagcacgaacagaacccatcctgttattcagcagccaccatctgatcaaaaa
agtagttctagaccaccatcaaaacaaccaggtggatcaagaggaggtaaacaaacagtc
tatagcagcagtaacagtacttctagcaccaacacaacaagtagcgccaatacaaccaat
aattctactaacaatgtggccagtaacggttcaggtagcaataacaacagcagaaataga
agatactataacaacaatacaaccaataacaattctaactcctcagcaagtaatttaaac
aacaacaataataataatcaaaatagaaacaaccaaaacaccaacaataatcaaagtaat
accaacaataataacaacaatagaggaggaagattcaattcaaagcaatcatacaaccat
catcgtaatctcctggagaatatgaacaaagttaatgagaatctccaccaagaaatacct
caacaatcaacaaccactccatccacctccgtccctaccacttctccaactaccgctcca
aaattgtcatattcagcaattgttggtggacaaacagtcactgacgatatcaacgaacta
gatactcataaaccatccaacttggctattgctaaagaattggttcaagacgaattatgg
aaagataagcttagtttgccacctagagatgaccgtatgcaaactgaagatgttacactt
accaaaggttctgactttgaagaattcggcttaaagagagaattattgatgggtatcttt
gaaaagggtttcgaaagaccatctcccatccaagaacaaactgtcccattagctcttttc
ggtagagacattttggccagagccaagaacggtactggtaagactgctgctttcattatt
ccttgtcttgaaagagttgatacttcaaagaatcaaatccaaattttgattttggttcca
acaagagaattggctttgcaaacaagtcatgtttgtaaagaaatcggaaagtacctcaac
gttgaagtcatggttaccacaggtggtacttctttgaaagatgatattgttagactttac
aagcctgttcacattctcgtaggtacaccaggtagaattatcgatcttgctagcaagggt
gttgctaacttgaacaatgtttccatgttggtcatggatgaagctgacaaacttttgagt
cctgaatttgttccattgattgaaaaacttatttcattcgttcctccatctcgtcaaatc
ctcttattctctgctaccttcccaattactgttaaggactttagagacaaatggctcacc
aaaccatacgaaatcaatttgatggacgagttaacactcaaaggtgtaacccaatactat
gcctttgtcgaagaaagacaaaaagttcactgtcttaacactttattctctaagctacaa
atcaaccaatctattatcttctgtaactctgttaacagagttgaattgttggccaagaag
attactgaacttggttatagttgtttctacatccatgccaagatgccacaagatttgaga
aaccgtgtcttccacgactttagaaatggtgcttgcagaaacttggtgtcttccgacttg
ttcaccagaggtatcgatattcaagctgttaacgttgttatcaactttgacttcccaaag
aactctgaaacctatctccacagaatcggtagatctggtagatatggtcacttgggtttg
gcaattaactttgttacctatgaagacagatttaacttgtacaagattgaacaagaattg
ggtactgaaattaagccaatacctccaactattgacaagaatttgtatgtcgcttaa
DBGET
integrated database retrieval system
