| Entry |
|
|---|
| Name |
(RefSeq) 3'-5' exonuclease and HRDC domain-containing protein
|
|---|
| KO |
| K12591 | exosome complex exonuclease RRP6 [EC:3.1.13.-] |
|
|---|
| Organism |
|
|---|
| Pathway |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:ngr00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NAEGRDRAFT_80761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:ngr03019]
NAEGRDRAFT_80761
Messenger RNA biogenesis [BR:ngr03019]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
NAEGRDRAFT_80761
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| AA seq |
956 aa
MKKKTNSQPYGGGQKKNNNNNNRNNNKQKPSNTTTQQQTTTSSSIIQQQQQANATATTTP
IVNNNTTTATQQNSTTTASSSNVNKQEGKASVLIGDKPLDPYLTELFSVLMSGTKASNEI
PSSKEFDFLTSHFPQFRGAMDESANALKLALSSFLGQKNKSNSVMDDPEVMFESTVDLLD
QYFENVDMALDEMDMESNADSVGVNPSQSNSGSSDQTLKSMSRPQLKWNDVDNRNMPFVP
NLKSKPNAFVASLEKSMKIGSLDDDDEEMSGGTKKMGVTFEHSTLPPFPFRFGVGNGVGG
ETTRQSSPHPYLPELLSLQFMKSQTTPPEKAISYAPLENSPCTWISTVEDLHKLATILEG
QDAFAIDLEQHSYRSFQGFVCLMQISTRSEDFLIDTLELRQHMHILNSSFTHPKIVKVMH
GSDCDILWLQRDFAIYCVNLFDTGQACRTLALPGCSLAYLLKHYCGIDADKKYQLADWRV
RPLPSEMVKYAREDTHYLLYIYDRLRQDIFNTKPNTSTVSGFERMEEVLVRSKELCMRRY
EKELFSETSYLSLIKFSRGCTASISENVIRVLFKWRDTVARKDDESIRYVLPDHMILSIA
QEAPTEVSQLLSCCNPVPKLVRRDAKIIVDLITKALQSRDMPEPTFSTPSKIPDESYINQ
HAKPSFELESPIVNPHYKTPSRMSPVMNTDDLYNIAGWIESKNYYPSSSMSKLTFSEEED
EVLETIENIRKHSNVNVTPSKKSSLFFPPSNSSFNKDKVSQIMSSFSLGNGQTSNKQQND
EDTSMMDSSNILTDDPTLDDAMDTSSSFINTPINNTKNPSARVTPEEERVPLSLNEIYKL
SQKNRKKNKQKKKLKQDSVSDPSPAYDGDDNDDEDIVIHQPTIPTPSESIPTQKPVDFMK
KIGWLGAEEELSASEEEKEEEVNASVAVKVPNYSKPNMNVRKKPSKNYVQNRQHKY |
|---|
| NT seq |
2871 nt +upstreamnt +downstreamnt
atgaaaaagaaaaccaattcccaaccctatggtggtgggcaaaagaagaacaataataac
aataaccgcaacaataacaaacaaaaaccatccaatacaacaacacaacagcaaacaaca
acatcatcttcaataattcagcaacaacaacaagctaatgcgactgctaccactactcct
attgttaacaataataccacaactgccactcaacaaaattccacaactactgctagtagc
agcaatgttaacaaacaagaaggtaaagcatcagttcttattggtgataaaccattggat
ccatatttgactgaattattctctgtcttgatgagtggaacaaaagcttccaatgaaatc
ccatcttccaaggaatttgactttctcacttcacattttccacaatttagaggtgctatg
gatgagtctgcaaatgctttgaagttagcattatcttcattccttggtcaaaagaacaag
tccaattctgttatggatgacccagaagtaatgtttgaatcaacagttgatttacttgac
caatattttgaaaatgtagatatggctcttgatgaaatggatatggaatctaacgctgat
agtgtcggagtgaatccttcacaaagtaattcaggttcttctgaccaaacccttaaatca
atgagcagaccccaattgaaatggaacgatgttgataacagaaacatgccgttcgtacca
aatttgaaatcaaaacctaacgcatttgttgcctcactcgaaaagtcaatgaagattggt
tccttagatgatgatgatgaagaaatgagtggtggtactaaaaagatgggtgtaaccttt
gaacatagcactttacctccattcccattccgttttggagtaggtaatggtgttggtggt
gaaacaactcgccaaagttctcctcatccatacttgcctgaattgttgagtcttcaattt
atgaaatcacaaacgacgcctcctgagaaggctatttcttatgctcctctagaaaactca
ccttgcacatggattagcactgtggaagatcttcacaagctagctacaatcttggaaggc
caagatgctttcgcaatagatttggaacaacacagttatcgttcattccaaggttttgtt
tgccttatgcaaatttctacaagaagtgaagacttcctcatagatactcttgaattgaga
caacacatgcatattcttaattcctccttcacacatcctaagattgttaaggttatgcat
ggttccgattgtgatattttgtggctgcagagagattttgcaatttattgtgttaacttg
tttgataccggtcaggcttgtagaactcttgctttacctggttgttctcttgcctacttg
cttaagcactattgcggaattgatgctgataaaaagtatcaattggctgattggcgagtg
agacctctcccaagtgaaatggtaaaatatgctagagaagatactcactatctattatac
atttatgatagattgagacaagatattttcaacaccaaacccaacacttctactgtttct
ggatttgaaagaatggaagaagttttggtaagatctaaggaattgtgtatgagaagatat
gaaaaggaactcttctcagaaacttcatatctttcccttatcaaattctctagaggatgt
acagcatccattagtgaaaatgttattcgagttttattcaagtggagagatactgtagct
agaaaagatgacgaaagtattcgttacgttttacctgatcacatgattctctcaatagcc
caagaagctccaactgaggttagtcaattgttaagttgttgtaacccagttcctaaactt
gtcagaagagatgctaaaattattgttgacttgataaccaaggcattacaaagtcgtgat
atgccagagccaacattctccacaccatctaagatccctgatgaaagctatattaatcaa
catgccaaaccatcttttgaacttgaatcaccaattgttaatccacattacaagactcct
tcaagaatgagtcctgttatgaatactgatgatttatataacattgctggatggattgaa
tccaagaattattatccatcatcttcaatgtccaaacttacattttctgaggaggaagat
gaagttttggaaaccattgaaaatatcagaaaacactccaatgtaaatgtcactccaagc
aagaaatcatctcttttcttccctcctagcaacagtagctttaacaaagataaggtatca
caaatcatgtcttcattctctctaggtaatggacaaacatccaacaagcaacaaaacgat
gaagatacatccatgatggacagtagtaatatccttacagacgatccaacattggatgat
gctatggatacatcctctagctttattaacactcctattaataacacaaagaacccatct
gcacgtgtgactccagaagaagagcgtgttccattgagtctcaacgaaatttacaaactt
tctcaaaagaatagaaagaagaacaagcaaaagaagaagctcaaacaagattctgtctct
gatccatctccagcttatgatggtgatgataatgatgatgaagacattgttattcatcaa
ccaactattccaacaccatcagaatcaattccaactcaaaaaccagtcgattttatgaaa
aagattggttggttgggagctgaagaagaattatctgcttcagaagaagaaaaggaagaa
gaagttaatgcttcagttgctgttaaggttccaaactatagcaaaccaaacatgaatgtt
cgtaaaaaaccatctaaaaattatgtgcagaataggcaacataaatactaa |
|---|
