Naegleria gruberi: NAEGRDRAFT_80800
Help
Entry
NAEGRDRAFT_80800 CDS
T01241
Name
(RefSeq) hypothetical protein
KO
K12600
superkiller protein 3
Organism
ngr
Naegleria gruberi
Pathway
ngr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NAEGRDRAFT_80800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngr03019
]
NAEGRDRAFT_80800
Messenger RNA biogenesis [BR:
ngr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
NAEGRDRAFT_80800
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_8
TPR_14
TPR_11
TPR_12
TPR_19
TPR_17
TPR_16
TPR_CcmH_CycH
TPR_6
ARM_TT21_C
TPR_MalT
ANAPC3
TPR_10
ARM_TT21_N
ARM_TT21
DUF7017
Motif
Other DBs
NCBI-GeneID:
8855691
NCBI-ProteinID:
XP_002673791
JGI:
Naegr1_80800
UniProt:
D2VQ57
LinkDB
All DBs
AA seq
1778 aa
AA seq
DB search
MSQASSAKMLKEHAKLIKECMGKQDWKGALVELKKALKLDNTNFNMFLYCGFCLGKLYVA
DQDEQYFTQAEQAYEKAASLQKDSEQPLLGLLELYEQKLSSATECRKKALQVCEKLLPLL
KSKDQEKWLNHLGKYHQWFNLDIRSLSESELTSALISKYEKLINDFSIIAEKSSSSKYTQ
MLDTLFLEQYRERLQIDKLLDEKVQEQILELREKQKKKLLKEKKKLSDRELEKLMPSDIE
LLPMNKREELKVTLKVETTQFYYSQNLETSVDNLLAQIVEFCKKNEMFCDFHVFDKMIER
TQQRFRLVQDKEVETKLKQGLVSICKEALSMHKNYFKAIEQLFLINEEDNYDIFDEKNLQ
EKVITRRMLHLFPYEGLSYIKLFELLRKENIKSDKIEDELMILLQRGIELIPHFIQGWIL
LSELYLSLEKYKNASEIARKGLLIVEERKTQTKASLDKQVAKLKILQAYSLLKFGALAEA
EEIYKEVMQNDADNLDAIKGIADIEYQRGNLTKSREYYVRAIQINPQDDLTLCQTGWFCY
LDKDYDAAVKYINAAIEVNPNNYLYFFRLSKVYWDWNESYRQDKQYCYSLLLKSARLNPN
FSSNYAYLGHFYKNIEQDEDRCIKCYKKAVTLNPLEDEAGENLGDIYISKGQLTLAASLF
QDATSRNNRAGWAWAKLGFYQQSQNLLDESILSFQHALRVSPLHALCWEGLGESYKQEGK
YLAALKAFSRAVELDSSLVFSMVQSAFIKFQLSEYDNSREIYEKVIALNEKFSVAYEGIA
AVLFKVAQNYYSDGLFTQCAHQVIRAQCVLTNGIKKHFATLKTLWKLLGDIQSYCFQIPE
RNIVEAISTYRELCKNDNSIYIETFQDELKTKLDYLKQASTSFTSLISLDENDSDTWFDL
AVSEINQLFDMVGPHGDDHKELRGKALEHIRKAITLSPHNSNYWNCMGIISDNDVVKQHC
YIRATQIDTKNHIAWNNLGALYLKNFNLKLARKAFLKAQAIYPESSVAWVGLALINENVT
NREGVIRAKEDFKHSTTLENVPPAYLGLAYTSLLSNDSIYAIQSIMKYFQFNTTDYAAWN
ILGVALEMQQQYEKSLEAFNKCEGLLIDYQIKYKSQADTQQKGFIHNTKSIIFAEADLYS
VENMLYLVRINKARVLCKLSKFNDASSVFELCKQYSSDDMGILMGSAITSCFASDFSFSI
KSILSAIESSSKKIKEGLESEKRLIELYNLIAKVYYQQKDFKKAKEYFEKCINEFPSHEE
AYLSLTSLLVVAEPKNSTPALEVIRKLKARQSSLSLETTKLEALIYCSYGEYEKARNSIC
KVIHMNPAEPKLWDLLSQVTLDYQFISMATDVKKKNKKSKAKFEVDETPIASTNSGAISQ
LTTQLLQNSLSKFSTETFVNDKSSVIERLYNIACLYYAMGSAPSYHNARITLKHAMSMAQ
KALMLDPSNMKIFRLLTSCTHSLSLIEKENSYNKAAGTLLKSYLEINDTVTDLPLQIALL
EQYIYNGEYTKCMGAIKSLMEKHKDNATIESSLFALLGKCILAKGESMEKVMKLFTNSLK
KDNTNLYAWYTLATILINQKKFTMAKYCVESCLSISKKNNDLSNEFLSNSMLAYICLMIS
LINNSKEMITDGIQFTKNAFRINNESAPVYLIYGKLQFLNGNLEEALNAFQQVIRIDPEQ
PLASINMYWVHYNKENWGPAEESLWAEKSKSSNQAEVVFTLASFAFESEMPAPALKFIQK
AIRLDPSNTKYWDYLDTIQQALKPKEPVKPQQQAKKKK
NT seq
5337 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaagcttcttctgccaagatgctaaaggagcatgccaaactcatcaaggaatgt
atgggaaaacaagattggaaaggagccttggtcgaattaaaaaaggctttaaaattggat
aatacaaatttcaacatgtttttatattgtggattttgtctgggaaaattatatgttgct
gatcaggatgaacaatactttactcaagcagagcaagcctatgaaaaggctgctagtttg
caaaaagatagtgaacaaccattattaggcttgttagaattatatgaacaaaaattatca
tctgctacagagtgtaggaagaaggctttacaagtttgcgaaaaattacttcctcttctc
aagtctaaagatcaagaaaagtggttgaatcatcttggaaagtatcatcaatggtttaat
ttggatattcgttcactttcagaaagtgaattaacttcagcactcatctccaagtatgaa
aaattgatcaatgattttagtattattgctgagaagagttcatcatcaaaatacacacaa
atgctcgatacattattccttgaacaatatagagagagattgcaaattgataaacttctt
gatgaaaaggttcaagaacaaattcttgaacttcgtgaaaaacaaaagaaaaaactcttg
aaggaaaagaaaaagttgagtgatagagaattggaaaaattaatgccaagtgatattgaa
ctcttaccaatgaataagagagaagaattgaaggtcactttgaaagtagaaactacacaa
ttttactattctcaaaatttggaaacaagtgtcgacaacctattggctcaaattgttgaa
ttttgtaagaagaatgaaatgttttgcgatttccatgtttttgacaagatgatagaaaga
actcaacaacgtttcagactagtccaagacaaggaagttgaaacaaagttaaaacaaggt
ttggtatctatttgtaaggaagctctctccatgcacaagaactatttcaaagctattgaa
caacttttccttattaatgaagaagataattatgacatttttgatgagaagaacttacag
gaaaaggttattactagaagaatgttacacttattcccatatgaaggtctttcctacatt
aaattatttgaattgctcagaaaggaaaatattaagagtgataagattgaagatgaatta
atgattctcttacagagaggtattgaattaatacctcactttattcaaggttggatctta
ctttcagagctttatttgagtttggaaaagtacaagaatgcttctgaaattgctagaaag
ggcttgttaattgttgaagaaagaaaaactcaaaccaaagcatctttggacaagcaagta
gcaaagttaaagattcttcaagcatattctctgttgaagtttggtgctcttgcagaggct
gaagaaatttataaggaggtaatgcaaaatgatgcagacaatcttgatgcaatcaagggt
attgctgatatcgaatatcaaagaggtaatttgaccaaatcaagagaatattatgtcaga
gccattcaaatcaatccacaagacgatttgactctttgtcaaacaggttggttctgttat
ttggacaaggattatgatgcagctgtaaagtacatcaatgcagccattgaagttaatcca
aataattacttgtacttctttagattgtctaaagtttattgggattggaatgaaagttat
agacaagataagcagtactgttactccttacttttgaagtctgcaagattgaatccaaac
ttttcaagtaactatgcttacttgggtcatttctataagaatatcgaacaagatgaagat
agatgtattaagtgctataagaaagccgttactttgaatccattagaggacgaagcaggt
gaaaatttgggcgatatttacatctctaaaggtcaattaacacttgctgccagtcttttc
caagatgccacctctagaaacaatagagctggttgggcttgggcaaagcttggtttttat
caacaatcacaaaatttattggatgaatccattctttcattccaacacgctttaagagtt
tctccattgcatgctctctgctgggaaggtcttggagaaagctataaacaagaaggtaaa
tacttggcagctctcaaggcattctccagagctgtcgaattagattcatctttggtattt
tctatggtgcaatcagcctttatcaaattccagttgagtgaatatgacaacagtagagaa
atctatgagaaggttattgctctcaatgaaaagttctctgttgcctatgaaggaattgct
gctgtcttgttcaaggttgcacaaaactattacagtgatggtttattcactcaatgtgct
caccaagttattagagcccaatgtgttcttacaaacggtattaagaaacactttgctact
ctcaagactttgtggaaattattgggagatattcaaagttattgcttccaaattcctgaa
agaaatattgtggaagccatctcaacatacagagaattgtgtaagaatgacaatagtatt
tatattgaaacattccaagatgaattaaagaccaagttggattacttgaagcaagcatct
acatcctttacaagtttgatctctcttgatgagaatgattctgatacttggtttgatttg
gctgtttctgaaattaatcaactttttgatatggtaggacctcatggagatgatcataaa
gaattgagaggaaaggcattagaacacattagaaaagccattacattgagtccacataat
agtaattattggaattgtatgggtatcatctctgacaatgatgtagttaaacaacattgt
tatattagagctactcaaatcgataccaagaatcatattgcatggaataatttaggtgcc
ttatacttgaagaatttcaacctcaaattggcaagaaaggcattcttgaaagctcaagct
atttatcctgaaagcagtgttgcctgggttggtcttgctttaatcaatgaaaatgttaca
aatagagaaggtgttattagagcaaaggaagatttcaaacattcaacaactcttgaaaat
gttcctcctgcctatcttggacttgcctatacttcattattgagcaatgactctatttat
gctattcaatctattatgaagtacttccaattcaatactacagattatgctgcttggaat
attttgggtgtagctctagaaatgcaacaacagtatgaaaaatctttggaagcattcaac
aagtgtgaaggcctcttgattgactatcaaatcaagtataagagccaagctgatactcaa
caaaaaggatttattcataataccaaatctattatctttgctgaagctgatttatactct
gttgaaaatatgttatatctagttaggattaacaaggcaagagttctttgcaaactctct
aaattcaatgatgccagctcagttttcgaactttgcaagcaatattcttcagatgatatg
ggtattttgatgggatctgccattactagttgttttgcttcagatttctcattctctatc
aagagtatcttatctgccattgagagctcttcaaagaaaattaaagaaggacttgaaagt
gaaaagagattaattgagttgtataatttaattgccaaggtttattatcaacaaaaagat
tttaagaaagcaaaggaatattttgaaaaatgtatcaatgaattccctagccatgaggag
gcttatctcagtttaacttccttattagttgtagcggagcctaaaaattctactccagct
ctagaagtaatcagaaagttgaaggcaagacaatcttctttaagtttagaaacaaccaag
ttggaagctcttatttattgtagttatggtgaatatgaaaaagctagaaactctatttgt
aaggtcattcacatgaatcctgccgaaccaaagttgtgggatttactttcccaagttact
cttgactatcaattcatttctatggcaacagatgttaagaagaagaataagaagagcaag
gccaaatttgaagtcgatgaaacaccaattgcttctaccaactctggagctatttctcaa
ctcacaacccaactcttgcaaaactctctttcaaagttttctacagaaacattcgttaat
gacaaatcttctgtaattgaaagattgtacaatattgcttgtttgtactatgcaatgggt
tcagctccatcttatcataatgctagaattacattgaaacatgccatgtctatggctcaa
aaagcactcatgttagatccaagcaatatgaaaattttcagattacttacctcttgtact
cattcactttctttgattgaaaaagaaaactcttacaataaggctgctggtactcttctt
aaatcttacttggaaattaatgatactgttactgatttaccactccaaattgctttgctc
gaacaatatatttataatggagagtatacaaagtgtatgggtgctatcaagtcattaatg
gaaaagcacaaggataatgcaactattgaatcatcattatttgcacttcttggaaaatgt
attttggctaagggagaatctatggaaaaggttatgaaattatttaccaattctctcaaa
aaggataatactaacttgtacgcttggtatactttggcaaccattttgattaatcaaaag
aaattcacaatggcaaagtattgtgttgaaagctgtttatccatttcaaagaagaataat
gatttgagcaatgaattcttatcgaatagcatgttggcatatatttgtttaatgatcagt
ctcattaataacagtaaggaaatgattactgatggtattcaatttaccaagaatgctttc
agaatcaataatgaatctgctcctgtctatttgatttatggtaaattacaattccttaat
ggaaatttggaggaggcactcaatgccttccaacaagttattagaattgatccagaacaa
cctcttgcatcaatcaacatgtactgggtacattacaataaggaaaactggggaccagca
gaagaatctttatgggctgaaaagagcaaatcatccaaccaagcagaagttgttttcaca
cttgcttcatttgcttttgaaagtgaaatgcctgctcctgctttgaaattcattcaaaaa
gccattagattagacccatccaatactaaatattgggactatttggatacaattcaacaa
gctctcaaaccaaaagaaccagtcaaaccacaacaacaagccaaaaagaagaaataa
DBGET
integrated database retrieval system
