Naegleria gruberi: NAEGRDRAFT_80977
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Entry
NAEGRDRAFT_80977 CDS
T01241
Name
(RefSeq) polyadenylate binding protein
KO
K13126
polyadenylate-binding protein
Organism
ngr
Naegleria gruberi
Pathway
ngr03015
mRNA surveillance pathway
ngr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
NAEGRDRAFT_80977
09123 Folding, sorting and degradation
03018 RNA degradation
NAEGRDRAFT_80977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngr03019
]
NAEGRDRAFT_80977
03041 Spliceosome [BR:
ngr03041
]
NAEGRDRAFT_80977
Messenger RNA biogenesis [BR:
ngr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
NAEGRDRAFT_80977
mRNA cycle factors
Stress granule specific factors
NAEGRDRAFT_80977
Spliceosome [BR:
ngr03041
]
Complex C
Other components
Complex C specific factors
NAEGRDRAFT_80977
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_occluded
RBD_RDR6
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
8854947
NCBI-ProteinID:
XP_002673420
JGI:
Naegr1_80977
UniProt:
D2VRH6
LinkDB
All DBs
AA seq
571 aa
AA seq
DB search
MNYSSASLYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDA
ERALDTLNYASVKGIPIRIMWSQRDPSIRKSGIGNIFIKNLDKSIDNKALYDTFSAFGNI
LSCKVCQATKKGDNGGDNVESAGYGFVHFETQEAAEKAIAKINGMLLNGKQVFVGPFVKK
TERLKILSNEDSFTNIYVKNLDASVDEKELSEVFSKFGEIQNAVVMRGENGASKEFGFIN
FADHASALIAIDEMNEKDFKNKKLFVGRAQKKNERRAKLKEYFQKLKQEKVNKYKGLNLY
VKNLDDSVDDERLRQEFSKFGDITSAKVMSDNKQSRGFGFVCFKTPEAANKALTEMSGHM
IGSKPLYVNFAQPKELRRSQLEAQYNARKQPQMIPQMMPQFFIPAQGAFPPPGSQIKPRW
QPVAGGRQSNQNRGGMSRGGSSQRGARGGNANTAKNAGRIKYNNNARNQPREQPQQTTPN
TQEAQTTQAPSDQLTAEYLAKLSEQDQKQLLGERLFPLVHLREPKNAPKITGMLLDMEVS
DILTLIESTDALNQKIKEAVKVLVEHGQNDQ
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaactatagttctgcttctctttacgtcggagacttgcacgaagaaatttctgaagct
ctcttgtttgaccttttccatgaagttggtccaattatttccatccgtatctgcagagat
gctatgactcgtaaatctcttggatatgcttatgtaaatttccaaaatccacaagatgcc
gagagagctctcgataccttgaattatgctagtgtaaagggtattccaatccgtattatg
tggtcacaaagagatccatcaattcgtaaaagtggtattggaaatatcttcatcaagaac
ttggataaatcaattgataacaaggctctttatgatacattctctgcctttggtaacatt
ttgtcctgtaaggtttgtcaagcaacaaagaagggtgataatggtggcgataacgtcgaa
tcagctggctatggttttgttcactttgaaacacaagaagctgctgaaaaggctattgct
aaaattaacggaatgttgttaaacggtaaacaagttttcgttggaccatttgtaaagaag
accgaacgtttgaagattttgagcaatgaagattcattcaccaatatttatgttaagaac
cttgatgcatctgttgatgaaaaggaactctcagaagttttctcaaagtttggagaaatt
caaaatgctgtcgttatgagaggagaaaacggcgcttcaaaggaattcggttttattaac
tttgctgatcacgcttcagcacttatcgctattgatgagatgaatgaaaaggatttcaaa
aataagaagttgtttgttggaagagcacaaaagaagaacgaaagaagagctaaattgaag
gaatatttccaaaaattgaagcaagaaaaggttaacaaatataagggtttgaatctctat
gttaaaaatttggatgattctgttgatgatgaaagattgagacaagaattctctaagttt
ggtgatattacatctgctaaagttatgtctgataacaagcaaagtagaggatttggtttc
gtctgtttcaagactccagaagctgccaacaaggctttgactgaaatgtctggtcacatg
attggatctaaaccactttacgttaactttgctcaaccaaaggaactccgtcgttcacaa
ctcgaggctcaatacaatgctagaaaacaaccacaaatgatcccacaaatgatgccacaa
ttcttcattcctgctcaaggtgctttcccacctccaggaagtcaaattaagccacgttgg
caaccagttgctggtggtcgtcaatccaaccaaaaccgtggtggtatgtctcgtggtggt
tcatcacaaagaggtgctcgtggtggtaatgctaatactgccaagaatgctggtcgtatt
aaatacaacaacaatgctcgtaatcaaccaagagaacaaccacaacaaactactccaaac
actcaagaagctcaaactacacaagctccatccgatcaattgactgctgaatacttggct
aagcttagcgaacaagatcaaaagcaattgttgggtgaaagacttttcccactcgttcac
ttgagagaaccaaagaatgcaccaaagattactggtatgctcttggatatggaagtttct
gatattttgacattgattgaatctactgatgctctcaatcaaaagattaaggaagctgtc
aaagttttggttgaacacggtcaaaacgatcaataa
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