KEGG   Naegleria gruberi: NAEGRDRAFT_82198
Entry
NAEGRDRAFT_82198  CDS       T01241                                 
Name
(RefSeq) nucleoporin SEH1
  KO
K14299  nucleoporin SEH1
Organism
ngr  Naegleria gruberi
Pathway
ngr03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ngr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    NAEGRDRAFT_82198
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ngr03019]
    NAEGRDRAFT_82198
   04131 Membrane trafficking [BR:ngr04131]
    NAEGRDRAFT_82198
Messenger RNA biogenesis [BR:ngr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     NAEGRDRAFT_82198
Membrane trafficking [BR:ngr04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    NAEGRDRAFT_82198
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st ANAPC4_WD40 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_1st Beta-prop_WDR3_2nd Beta-prop_WDR75_1st EIF3I Beta-prop_HPS5 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR41 Beta-prop_WDR35_TULP_N Beta-prop_IP5PC_F Beta-prop_EML Beta-prop_TEP1_C Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 8862728
NCBI-ProteinID: XP_002669280
JGI: Naegr1_82198
UniProt: D2W319
LinkDB
AA seq 402 aa
MIGKHIMEVFGKLNGLIQNSDNIWEEPPANTGPASGLAPLVISQGIIGQPSSNQSSTVQR
VVSSTSNIIQNSSSTSNTTTNDGVDGNTSPVSNGVIVGGGMDHSSSSGNLPSSSSSTNLN
SVMVGGNVNMVNNSTVQNTSPNPVNNPHASRRSWLLKATLVDSTDDVVDIKFAPKHLGLK
LATCSLSGKVRVYEAFDVMNLAHWSIGFDFDANNGGKIHCMSWCPYRFKEPMMVIGCEDG
KLRIWHYTQNRKWQAWIPSQVIPNAQNISQLVGYTPGSVALKSIVVNEGNITQVIPLIGH
SQPIHDVSWAPNLGRSYDLIASASKDGSVRIWKLNSETKSIELMDIDETHKHNSEVWKVE
WNLSGTVLASSGDDGSVRLWKYNFEEKKWKCESVIEGAKKDH
NT seq 1209 nt   +upstreamnt  +downstreamnt
atgattggaaagcacataatggaagtatttggaaagttgaatgggctcatccagaattcg
gacaatatttgggaagaaccgcctgcaaatacaggacctgctagtggtttagcaccattg
gttatatcacaaggaattattggacaaccttcatcaaatcaatctagtactgttcaaaga
gttgtttcttcaacatcaaatattattcaaaattcatcatcaacttcaaacacaactacc
aatgatggagttgatggaaatacatcaccagtttcaaatggagtaattgttggtggagga
atggatcattcatcaagtagtggtaatttgccaagttcttccagttctaccaacttgaat
agtgtaatggttggtggtaatgtaaatatggtcaataattctactgttcaaaatacatca
cctaatcctgtgaataatcctcatgcatcgagaagatcctggcttttgaaggcaactctt
gtcgattccactgatgatgttgtagatattaaatttgcaccgaagcacttggggttaaag
cttgctacatgctctctatcagggaaagttcgtgtctatgaagcttttgatgtgatgaat
cttgctcactggagtatcggatttgattttgatgctaataatggaggaaaaattcactgt
atgagttggtgtccatataggtttaaagaaccaatgatggttattggatgtgaagatggt
aaattaagaatttggcactatacacaaaatagaaaatggcaagcatggattccgtcacag
gttattcctaatgcacaaaatatctcacaactagttggatacacaccaggttctgtagcc
ttgaaatccattgttgtgaatgaaggaaatattactcaagtcattcctttaattggtcat
tcacaaccaattcatgacgtatcatgggctccaaatttaggaagatcttacgatttaatt
gcatcagcatctaaggatggctctgtaagaatttggaaactcaactctgaaacgaaatct
atcgagttaatggacattgatgaaacacacaaacacaattctgaagtttggaaagttgaa
tggaatttgagtggaactgttcttgctagtagtggagatgatggctcagttcgtttgtgg
aaatataatttcgaggaaaagaaatggaaatgtgaatcagtaatagaaggagctaaaaaa
gatcactaa

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