Naegleria gruberi: NAEGRDRAFT_82942
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Entry
NAEGRDRAFT_82942 CDS
T01241
Name
(RefSeq) damage-specific DNA binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
ngr
Naegleria gruberi
Pathway
ngr03420
Nucleotide excision repair
ngr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
NAEGRDRAFT_82942
09124 Replication and repair
03420 Nucleotide excision repair
NAEGRDRAFT_82942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ngr04121
]
NAEGRDRAFT_82942
03400 DNA repair and recombination proteins [BR:
ngr03400
]
NAEGRDRAFT_82942
Ubiquitin system [BR:
ngr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
NAEGRDRAFT_82942
DNA repair and recombination proteins [BR:
ngr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
NAEGRDRAFT_82942
TCR (transcription coupled repair) factors
Cul4-CSA complex
NAEGRDRAFT_82942
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
8849898
NCBI-ProteinID:
XP_002681776
JGI:
Naegr1_82942
UniProt:
D2V2C4
LinkDB
All DBs
AA seq
1103 aa
AA seq
DB search
MSFNYVSYAYKPTTIGCSASGNFTSPSDINLIMCKNQYLQVNRLSEEGVSSVVEFEAPGR
IDTMSLFRPSGEKQDLLFITIEDTFFTLGFIDGKIETLSSGSIDDPVGRRSESGSITTID
PLCRAVALSIYEGLLKIIPFENNKHQFKEAFNVRLEELNVIDIAFLESLGSKSKSGPTFA
LLYQDHVGSRHVKTYEVKTLDKDMEESSLNQLNVDHGANILIPVPAPLGGVICVGEAQVS
YINESNKNHSVASPANSRMAIRSYGKLDNTRWFLGDQSGQLYLLSLQVSDSEVTGLTLKE
LGVTSISSCISYLDNGYVFIGSNYGDSQVIRISDELNPETNSYFEVFQTYSNIGPIVDFC
FVDADKQGQGQIVTCSGAFKDGSLRIIKNGIGIEELTTISDLVGLNRIWSLKTETGEEKY
LVMSFTGQTLISSVDNEEIGEAKIPGFDVDSTTVLCDTVIGNNYLQVTDKTARLVSSHTL
ELIDEWKPSSGTISLAASNPTQLVVSLGEGKLVYIEISAQSLKQIQQTKLDYEVSCIDIS
PEEGKISSTVCAVGMWTEISVRVLTLPSFDILTVQELGGEILPRSILMPTFEGINYLMCG
LGDGHLFTFKMDRGMGILTDKKRIVAGSKPIMLRPFISKDRQLNVFAASERPTIIYSRNQ
KLVYSNVNLGEVNDMCSFNHESFPFHIAIANENSILIGQIDEIQKLHIKTVQLHAQPTKI
CHQPSTKAYGLLITQFENPETSAIFSLDENNFEKKSEIRLEGNELGQSIISCKFTDDDNE
YFIVGTAITEGDEEEPSKGRILVLQVQDDKLVLKAEKDVKGAVMVLHSFNGKLLAGVSGR
LMLFKWAESDDGDNKDLVQECSCSGGIYILDIDSHGDFILIGDMMKSVHLFVYENPEEQH
VSGNLRLISKDYQYSWLSCSLMLNESEYVAVDQQGNMITLKKNDEAASEEERKQLVRVGK
YYCSDRVNRIQPGFIGMRFANSSSDINTQPVKTALFGTISGGIGVLAQLPPETFAFVTKI
QKAMSSVVTGLANISRETYRQYRSERTREDSVGFIDGDFVESFLEFDFETQQRVIEELSN
NHQEQITLEELVKNIEDLSHLIH
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcaattatgtttcctacgcttacaagcctaccacaattggttgttcggcttcc
ggaaactttacatcaccaagtgatatcaatttaatcatgtgtaaaaatcaatatcttcaa
gtaaatagattgagcgaagaaggtgtttcttccgtggttgaatttgaagcacctggaaga
attgataccatgtctttattcagaccatcaggagaaaaacaagatttactttttattaca
attgaagatacattctttacacttggatttattgatgggaaaatagaaacactttccagt
ggttccatagatgaccctgtcggaagaagaagtgaaagtggctccatcacaacaattgat
cctctctgtcgtgctgttgcactctcaatatatgaaggattgttaaaaattattcctttc
gaaaataacaaacatcaatttaaagaggctttcaatgttagattggaggaattgaatgtt
attgatattgccttcttagaaagtttaggatcaaaatccaaatctggacctacttttgct
ttactctatcaagaccatgttggatcaagacatgttaaaacgtatgaagttaaaactctt
gacaaggacatggaagaatcatccctcaatcaattaaatgttgatcatggagccaatatt
ttaattccagtccctgctcctttgggtggtgtaatttgtgttggagaggctcaagtttca
tacattaacgaatctaataagaatcattccgtggcatctccagccaactcacgtatggct
atccgttcttatggaaagttagataatactagatggtttttgggtgaccaatcgggtcaa
ttatatttattaagcttacaagtttctgatagcgaagttactggattgactcttaaggag
ctcggagttacatcaatttcatcatgcatttcttacttggataatggatacgtttttatt
ggatcaaattatggagactcacaagtcatacggattagtgatgaattgaacccagaaacc
aactcatactttgaagttttccaaacctattctaatattggacctattgtagatttttgt
tttgttgatgccgataaacaaggtcaaggtcaaattgttacatgttcaggtgcctttaag
gatggttcactccgaattatcaagaatggtattggtattgaagaattgaccaccatttct
gatttggttggtttaaatcgtatatggtcccttaaaactgaaactggagaagaaaagtac
ctcgtcatgtcttttaccggacaaactcttatttcctcagttgataacgaagaaattgga
gaagctaagattcctggttttgatgtggattcaaccactgtattgtgtgatactgttatt
ggaaataattacttgcaagttaccgataaaactgcaagattagtaagctctcatactttg
gaattgattgatgaatggaaaccgtcaagtggcaccatcagtcttgctgcatcaaatcca
actcaattggtagtatcccttggtgaaggaaaacttgtatatattgaaatttctgctcaa
tcattgaaacaaattcaacaaactaaattggattatgaagtttcttgcattgacattagt
cctgaagaaggtaaaatatcatctactgtttgtgcagttggtatgtggacagaaatttct
gtcagagtattgacacttccatcttttgacattctcactgttcaagaattgggaggagaa
attttaccgagatccattttaatgccaacctttgaaggtattaattatttaatgtgtggc
cttggtgatggtcatttgttcactttcaaaatggatagaggtatgggcattttgactgat
aagaagagaattgttgctggaagtaagccaatcatgttgagaccatttatttccaaggac
agacaattgaacgtatttgctgcctctgagagaccaaccattatttacagcagaaatcaa
aaacttgtatattctaatgttaatttgggagaagttaatgatatgtgttcattcaatcac
gaaagtttcccattccacattgccattgctaatgaaaattccatcctcattggtcaaatt
gatgaaattcaaaaacttcacattaagactgtccaattacacgctcaaccaactaagatt
tgccatcaaccttcaaccaaggcttatggtcttttaattactcagttcgaaaacccagaa
actagtgccatcttctccttggatgaaaacaactttgagaaaaagtcagaaatccgtctt
gaaggtaatgaattaggtcaatccattatttcatgcaagttcacagatgacgataatgaa
tattttattgttggtacagcaattactgaaggtgatgaagaggaaccatcaaagggaaga
attctcgttcttcaagttcaagatgacaaactcgtactaaaggctgaaaaagatgttaag
ggagctgtcatggttctccactcattcaatggaaaattattggctggtgtctctggtaga
cttatgctcttcaaatgggctgaatctgatgatggtgataataaggatctcgtccaagaa
tgttcatgtagtggaggtatctatattcttgatattgatagtcatggagactttattctt
attggtgacatgatgaaatctgtacatttattcgtttatgaaaatccagaagaacaacat
gtctctggtaatctcagactcatttctaaggattatcaatactcttggttaagttgttcc
ctcatgctcaatgagagtgaatatgttgctgttgatcaacaaggaaatatgattacactt
aaaaagaatgatgaggctgcctctgaagaagaaagaaaacaacttgttcgtgtcggcaag
tattactgctctgatcgtgtaaatagaattcaacctggatttattggaatgagatttgcc
aattcatcctctgacattaatactcaacctgtaaagactgctctctttggtaccattagt
ggtggtattggtgttttggctcaattacctccagagacttttgcatttgtgacaaagatt
caaaaggctatgagtagtgttgtgactggtctggccaatatttctcgtgaaacctatcgt
caatacagatcggagagaactagagaagactcggttggttttattgatggtgactttgtg
gaatccttcttggaatttgattttgaaactcaacaacgagtcattgaagaattgtcgaat
aatcatcaagaacaaatcactttggaagaacttgttaagaatattgaagatttgtctcac
ttgatccactaa
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integrated database retrieval system
