Naegleria gruberi: NAEGRDRAFT_83135
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Entry
NAEGRDRAFT_83135 CDS
T01241
Name
(RefSeq) DEAD/DEAH box helicase
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ngr
Naegleria gruberi
Brite
KEGG Orthology (KO) [BR:
ngr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngr03019
]
NAEGRDRAFT_83135
03041 Spliceosome [BR:
ngr03041
]
NAEGRDRAFT_83135
03036 Chromosome and associated proteins [BR:
ngr03036
]
NAEGRDRAFT_83135
Enzymes [BR:
ngr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NAEGRDRAFT_83135
Messenger RNA biogenesis [BR:
ngr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
NAEGRDRAFT_83135
mRNA cycle factors
Common to processing body (P body) and stress granule
NAEGRDRAFT_83135
Spliceosome [BR:
ngr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
NAEGRDRAFT_83135
Chromosome and associated proteins [BR:
ngr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
NAEGRDRAFT_83135
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
Utp25_C
CMS1
P-loop_SecA
tRNA-synt_1b
Motif
Other DBs
NCBI-GeneID:
8848916
NCBI-ProteinID:
XP_002677516
JGI:
Naegr1_83135
LinkDB
All DBs
AA seq
535 aa
AA seq
DB search
MREQNNYFKPQQSRYQPYDRNGGGSGGYNNQRGGGGGRYGGDNEFRNDRGPRSFNDNEAS
AGPAHIREDEPEEDLFNKRNTGINFEKYENIPIEVFGRDPPTPLATFEEADLHELLMTNV
KKSGYTKPTPIQKHSMPAIVTSKRDMMACAQTGSGKTAAFLLPIINALLKSGIHKDKRRF
APNKGNPKAVILAPTRELCQQIYDECRKFIFQTYLKTVVVYGGASSGYQMKQLERGVDIL
VGTPGRMNDFIQREKLDMSGVQYLVLDEADRMLDMGFEPQIRSIVEGSGMPPKGDRLTLL
YSATFPKETQKLALDFLHDELFVQVGIIGGTTDNITQSFYQVDRRGKQDKLVEVLTEKKE
EREKTLVFVQQKSTCDRIYELLTPLGFKCSVIHGDKDQRSRERSLRQFKDGYTNILVATD
VAARGLDIEKVAHVINYDLPKEIDSYIHRIGRTGRVGNLGIATAFFDPSEDGKLCRELVK
ILKDANQEIPEFIENAAYNPFGGRGDGGFRRGGGGFRGGRGGGRGGFGGGFNKRW
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgagagaacaaaacaactatttcaaaccacaacaaagccgttatcaaccatacgaccgt
aatggtggtggtagtgggggatacaataatcaaagaggtggcggtggtggccgttatgga
ggtgataacgaattcagaaacgatagaggtccaagatcattcaacgataatgaagcaagt
gctggtccagcacacatcagagaagatgaaccagaagaagatttattcaataagagaaac
actggtattaactttgaaaagtatgaaaatattcctattgaagtttttggtagagatcct
ccaactccactcgccacttttgaagaagccgatttacatgaacttttaatgactaacgtt
aagaagagtggttatactaaaccaacaccaattcaaaagcactctatgcctgctattgtt
acttcaaagagagatatgatggcttgtgctcaaactggttccggtaagactgctgctttc
ctcttgccaattattaatgctctcttaaaatcaggaattcacaaggataagagaagattt
gctccaaacaagggtaatccaaaggctgtcattcttgctccaactagagaattgtgtcaa
caaatttatgatgaatgtagaaagttcatcttccaaacttatttgaagactgtagttgtt
tatggtggtgcttcaagtggttatcaaatgaaacaattagaaagaggtgttgatattctt
gttggtactccaggtagaatgaatgactttattcaaagagaaaagctcgacatgtctggt
gttcaatatttggttttggatgaagctgatagaatgttggatatgggtttcgaaccacaa
attagatctattgtcgaaggtagtggaatgccaccaaagggtgatcgtttaactttatta
tacagtgctaccttccctaaggaaacacaaaagttagctctcgactttttacatgatgaa
ttgtttgttcaagttggtattattggtggtactactgataacattacacaaagtttctat
caagttgacagacgtggtaaacaagataagcttgttgaagttttgactgaaaagaaggaa
gaaagagaaaagactcttgtctttgtccaacaaaagagtacttgtgatcgtatttatgaa
ttgttgactcctcttggattcaaatgttcagttattcacggtgataaggatcaaagatct
agagaaagatcattgagacaattcaaggatggttatactaatattcttgttgctactgat
gttgctgctagaggtttggatattgaaaaggtagctcacgttatcaattatgatttgcca
aaggaaattgattcatacattcacagaattggtagaactggtcgtgttggtaacttgggt
attgctactgctttctttgatccatctgaagatggtaaattgtgtagagaattggttaag
attttgaaggatgccaatcaagaaattccagaatttattgaaaatgctgcttacaatcca
tttggcggtagaggtgatggtggtttcagaagaggaggcggtggcttcagaggaggtaga
ggtggtggtagaggtggattcggtggtggattcaacaagagatggtaa
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integrated database retrieval system
