Neoarius graeffei (lesser salmon catfish): 132864745
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Entry
132864745 CDS
T10798
Symbol
rxrga
Name
(RefSeq) retinoic acid receptor RXR-gamma-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03320
PPAR signaling pathway
ngra04148
Efferocytosis
ngra04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
132864745 (rxrga)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
132864745 (rxrga)
03320 PPAR signaling pathway
132864745 (rxrga)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ngra03000
]
132864745 (rxrga)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ngra03310
]
132864745 (rxrga)
Transcription factors [BR:
ngra03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
132864745 (rxrga)
Nuclear receptors [BR:
ngra03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
132864745 (rxrga)
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
132864745
NCBI-ProteinID:
XP_060754144
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Position
17:complement(44370696..44402281)
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AA seq
432 aa
AA seq
DB search
MDQTEYLHLSSSVQVDHSHLRPPSQAPVGSMVTHLHPSVISGIASPYSVITSTSSSLSST
TSSQPSTPNMGFNPQMNTLDASRDVKPPANISSSYQCISPGFLSKHLCSICGDRSSGKHY
GVYSCEGCKGFFKRTVRKDLTYTCRDSKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE
ERQRGRDKNDNEVDSSSSLNEEMPVEKILDAELSVEPKTDTYIQTNADNSTNDPVTNICQ
AADKQLFTLVEWAKRIPHFSQLPLDDQVILLRAGWNELLIASFSHRSVSVKDGIVLGTGL
HVHRNSAHTAGVGSIFDRVLSELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVE
ALREKVYASLESYTKHKYPDQLGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTF
LMEMLEAPHQIT
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaactgaataccttcatctgagttcttcagtacaggttgaccacagtcaccta
aggccaccctcccaagcacctgtgggctccatggtaacacacctccatccgtctgtcata
agtggtattgcatcaccctactccgtcatcacctccacctcctcatcactgagctccacc
acctcatcccagcccagcacacctaacatgggcttcaatccccagatgaacaccctggat
gcctctagagatgttaaacctcctgctaacatcagcagcagctaccagtgcatcagtcca
ggctttctgtccaaacacctgtgctccatctgcggagatcgctcttctggtaaacactat
ggagtatacagctgtgaaggctgcaagggcttctttaagagaactgtgcggaaagatctg
acatacacatgccgggacagtaaggactgtttaatagataagcgccagaggaaccgctgt
cagtactgccgctatcagaaatgcctggcaatgggaatgaagagagaagctgtgcaggaa
gaaaggcaacggggtcgagataaaaatgataatgaggtggattccagcagcagtttaaat
gaagaaatgccagtggagaagattttagatgctgaattatctgtggagccaaaaacagac
acctacatccagactaatgcagacaactcaacaaacgaccctgtcaccaacatctgccag
gcagctgataaacagctcttcaccctggtggagtgggcaaaacgcatcccgcacttctct
cagctacctctggatgatcaggtcattctcctacgagcaggctggaacgagctgctcatt
gcgtccttctctcatcgctctgtgtcagtaaaggatggtattgtgttaggcacagggctg
catgtccaccgcaacagcgctcacactgcaggggtggggtccatctttgacagggttctt
tctgagctggtgtctaaaatgaaggacatgcagatggacaaaacggagcttggctgcctc
agagccattgttcttttcaacccagatgccaaaggtttgtccaatccatctgaggtcgag
gcactgagggaaaaagtttatgcctcactggagtcatacaccaagcacaaatatccagac
cagctgggcaggtttgcgaagctcctgctgcgtcttcctgctcttcgctccatcggcctc
aaatgtctcgagcatcttttcttctttaagctcatcggcgatacaccgatagacacgttc
ctcatggagatgctggaagctccacaccaaatcacgtga
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