Neoarius graeffei (lesser salmon catfish): 132866178
Help
Entry
132866178 CDS
T10798
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
Ribosome biogenesis [BR:
ngra03009
]
Eukaryotic type
90S particles
Other 90S particles
132866178 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
132866178
NCBI-ProteinID:
XP_060754771
LinkDB
All DBs
Position
18:complement(38291463..38388272)
Genome browser
AA seq
1833 aa
AA seq
DB search
MASGEEDFPRGGPVKKTPELKTSKITKPRVEVDNLFETREPIVKKKKKAASKHEDEKAAK
RQKTAEGLKLNTAERVDILHMKNQKVGMVMLGCVRELLNCEVVLGLPSGLKGYLPVSNIC
DAYTAILSNAVDTGTDLEELVSPSHLLAPGQLVRCVVSSLDSSKEGYVCLKLSINPKDVN
KELNSSSLKAGMTLSGCVESIEDHGYLIDIGVRGTKAFLPREEAKDEAKTSKRSKTFQDL
KVGQYVTAMLEEVKNEGRVVRLSLNPAAVNQACAETHHGWTLSNLLPGLLVQTCIKKVTA
HGLIVTFLSSYTGLVDFMHIDPGKLSTYSVGDEVKARILYVDPSSRLVGLSLRSHLLQPE
GVVLDDVISERTGEVLKGCKMVSLHYNSGAVMELPDGTPAFVHRSHLKVSEGEFNPNRLL
AEPEHTLRIIDYSPMEQVHMATMNKNLIEARFFTYQDIKPGQIVEATVQSLEKYGLQVKI
TDHIKGFVPRIHLADIVLKNPEKKYREGMRIKCKVLSVDYQNKKIILSRKKTLMETTLPL
FLSYADACVGLVSHGFIVCIKDFGCIVRFYGDVKGLVPMSELTLEPTNNPQGLFYVGQVI
QAKVLKCDVENEKLLLSFKAVTQNDLEKIRSMKFDLEVGKKVEVAVRKKCQTALEVSILP
EEIPALLPTVHLSDHVTNCPLLWVGLQEGDTISNVVCLSKNKQSITVSKKPSLVAALEAE
NLVTSFSELQVGMVMVGWVKSVMPYGIFVSFPHGLFGLAPKAAMSDKFITDTAEVFELGQ
TVLAKVTNLDEVKCRFLISLKVSDVSWAESDVQARLIQGQRERISVYKAMTLRGGSDVLQ
QLSSVSLGDKLKMTVEMTREDGSVVLTSDQLSHATVLASKYHITDVNTTPGSKASAVVLH
VDFVTSEVHVSLLPKLRVTKKKLQKNSQHTATVQFMDKDFAVISLGNTGHLTVISTTSHL
NEMFHFESEKLSVGHNLTVTITEPSSEDLGGRALVDYQLSAKKSKSSMPQNRAEEHKYKI
GDFVTAKIKTIKPLCVLVTLPDGTMGSVHVSQIHESPGVGGFPTSALKVGMEVKGRVIGA
RQFHSHRFLPITHPNFVFSVPELTLLPSKLNDDATVASLENRPKLDSYKSGQEIMCFVSK
YLPESKCLEVAVSPNVFGSVELLAMITKPREANHPGKLFKHGQCLSAKVVEITPKKRHQL
KLSLTGTHALKKGVVTVGMVAKIIPQKGLIVRLPFKQSGVACITDLTDAYVEDPFQQYKK
DQVVRCQVIGKKGRNFQLSLRLSRIHAGKALPVKDVDLKSILELQEGQIIQGYVKNVDKM
GIFLRLSRLVTGRVLFQHATNYFAVDSDLFQERVSQNALLTAKVLHVDAKNKHVALSLLP
EDTGKADILPESLGLPLRLKGKEKEAHDKKSAARKRKKSESEQNEAREAKKRKKEEKDAA
INKKKLTKERRLKSLQADDQDSGVEVYFREKDDDQAKKRGKSEAAAPEEPGRLQVASDFS
WDVVLSSLKPASSVENAYESSEDEPDDHTKTTKKSRREAEMERKEAELKLSKLEAELMEP
SARPESTEAFERLLLSSPDSSLLWLQYMAFQLQATQIEQARAVAERALKTISFREEQEKL
NVWVALLNLENMYGTEESLQKVFERAIQYCEPMPVYQQLADIYTKSSKIKEAENLYKNMV
KRFRQEKAVWQSYGSFLLRQGQSDAANALLQRALQSLSNKEHVDLIVKFARLEFQYGNTE
RAKAMFEKVLSSYPKRTDLWSVYIDLMMKHGSQKEIRALFDHVVHLSVSVKKIKFFFKRY
LDYEKKHGDPKSIQAVKQKALEYVESKRTDAVN
NT seq
5502 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaggagaagaagatttccctcgtggaggcccagtcaagaaaacccctgagctg
aaaacctctaaaattaccaagcctcgtgtggaggtggacaatctttttgagactcgagaa
cccatagtgaaaaagaagaagaaagctgcgagtaagcatgaagatgaaaaggcggccaaa
aggcagaaaaccgctgaaggtctgaagctgaacacagcagagcgtgtggatatcctccat
atgaagaaccagaaggtgggcatggtgatgctcggctgtgtaagggagctcttaaactgc
gaggttgtcctcggtctccccagtgggcttaaaggctacttgcccgtctctaacatttgt
gatgcttacacagcgatcctgagcaatgcagtagacactgggacagatctcgaggaactt
gtgtctccttcccacctccttgccccgggccagctggtcaggtgtgtggtgtcgtcttta
gattcatccaaagagggctatgtctgtctgaaattgtccatcaacccaaaggacgtgaac
aaggagctcaactccagctctctgaaagcaggcatgactctgagtggttgtgtggagagc
atcgaggatcacggttacctgatagacatcggcgtgaggggaacaaaggcttttctgccc
agagaggaagcaaaggatgaagccaagacctctaaaagaagtaaaacctttcaggatctg
aaagtgggtcagtatgtgacggccatgctggaggaggtgaagaacgagggacgggtggtg
cgtctttctctgaaccctgcggctgttaatcaggcctgcgcagagacgcatcatggctgg
acgttgagtaacctcttacccggactactggtccagacctgcatcaagaaggtgacggct
cacggcttgatcgtaacgttcctctcttcttacaccggcctggtggacttcatgcacatc
gacccgggtaaactgtccacttacagtgtaggagacgaggtgaaagctcgtatcctgtat
gtggacccgtcctctcgtctggtgggtctgtccctgcgcagccacctcctacaaccagag
ggtgtcgtgttggacgatgtcataagtgagcgaacaggggaggtgctgaagggctgcaag
atggtttctttgcactacaactctggagctgtgatggagctgccagacgggacccccgcc
ttcgtgcacagatcccatttgaaagtctccgagggggagtttaacccgaaccgactcctt
gctgaaccggaacacacactgagaattatagactacagcccaatggagcaggtccacatg
gccacgatgaacaagaacctgatcgaagcgcgcttcttcacctatcaagatattaaacca
gggcagatagttgaggccacggtgcagagcctggagaagtacggcttgcaggtcaaaatc
acagaccacattaaaggcttcgttcccagaattcacctggcggacatcgttctcaaaaac
cctgagaaaaagtacagggaaggcatgaggatcaaatgtaaagttttatcagtggactac
caaaataagaagatcattctgagtaggaaaaagactctgatggagacgacactccctctt
ttcctgtcatacgcggacgcctgcgtgggtctcgtctcccacggcttcatcgtctgcatc
aaggattttggctgcatcgtaagattttacggtgacgttaagggcctggtgccgatgtct
gagctgaccttggagcccaccaacaacccacagggtcttttttacgtgggacaggtgatt
caagccaaagtgcttaagtgtgatgttgaaaatgagaaactgctcctgtcctttaaagcg
gtgactcagaatgacctcgagaagatccgaagtatgaagttcgacttggaagtcggaaag
aaagtggaagtggctgtacgcaagaaatgccagactgcccttgaagtgtctattctccca
gaagagatacctgctctacttcccacagtgcacctctctgaccatgtgaccaactgccct
ctgctgtgggtggggctacaggaaggagacaccatttccaatgttgtgtgtctgagcaaa
aacaagcaaagcatcactgtcagtaagaagccgtcactggttgcagctctcgaggcagaa
aacttggttacatctttctcggagctgcaggtggggatggtgatggtgggctgggtgaag
agcgtcatgccctacggcatctttgtcagcttccctcacggcttgttcggccttgcaccc
aaagctgccatgagtgacaagttcatcacagacactgcagaagtgtttgagttaggacag
accgtgctggccaaggtgaccaacttggatgaggtgaagtgccggttcttgatcagcctg
aaggtgtcagacgtgagctgggcagagagcgatgttcaggccagactgatccagggtcag
cgtgaaaggatatccgtctacaaggcaatgactttgagaggtggctcagacgtgctgcag
caactctcctctgtgtcacttggggataaattgaagatgacggtggaaatgactagagaa
gacggctcagtcgtcctgacctcagatcaactcagccatgccacagtgctggcctccaag
taccacatcacagatgtgaacacaactccaggcagtaaggcctctgccgtggtgcttcac
gttgactttgtgacctctgaggttcacgtgtccctcctgccaaaactcagggtgacgaag
aaaaagttacagaaaaactcccagcacaccgcaacagttcagttcatggacaaagacttt
gccgtaatatcattgggcaacaccggtcacctgactgtgatttccacaaccagccacctc
aacgaaatgttccattttgaatccgaaaagttgtccgtgggtcataatctaaccgtgacc
ataacggagccaagcagtgaagatctgggtggacgagctctcgtagattatcagctctcg
gctaaaaaaagcaaatccagcatgccccagaacagagctgaagaacacaaatataagatt
ggggactttgtgacagcgaagattaaaaccatcaaacctctgtgtgtacttgtgactttg
ccggatggaacgatgggaagcgtgcacgtttctcaaatccatgaatcgcccggagtagga
ggattccccacgtcggccctgaaggtcggcatggaggttaagggaagggtgatcggggct
cgtcagttccacagccacagatttctgcccatcacacatcccaacttcgtgttctctgtg
cctgagctcacacttctacccagtaaactgaatgacgatgcgactgttgcctcactggag
aaccggcctaaactggacagctataaatctggacaggagatcatgtgctttgtatctaaa
taccttccagagtcaaagtgtcttgaggttgctgtgtctccgaacgtgtttggatccgtg
gagctgctggcaatgatcaccaaacctagagaggcaaatcatccaggaaagctcttcaaa
catggccagtgtctctccgcgaaggtggtcgagatcacccccaaaaagcgtcaccagctc
aaactttccctgacagggacgcatgccctcaagaagggggttgttactgttggcatggtg
gcgaaaatcatcccccagaagggcttgattgtgcgtctgccgttcaagcagtctggcgtg
gcatgtataaccgatttaacagacgcatacgtggaggatccgtttcagcagtacaaaaaa
gaccaggtggtcagatgccaggtcatcggtaaaaaaggcagaaatttccaactgtctctg
cgtctgtccaggatccatgctggtaaggccttgccagtcaaagacgtggacctcaaatcc
atcttggagcttcaggagggacagattatccaaggatatgtaaaaaatgttgacaaaatg
ggcatattcttgaggttatccagattagtcacgggaagagtcctgttccaacatgccaca
aactactttgcagtcgactccgacctgttccaagaacgcgtctcccagaatgcactgctg
acagccaaagttctccacgttgacgcaaagaacaaacacgtggctctctccttactcccg
gaggacactggaaaagcagacattctcccagaatcccttgggcttccgctgcgcctgaag
gggaaggaaaaggaggcgcatgacaagaagagtgctgcaaggaagcgcaagaagtctgag
agcgagcagaacgaagctagggaagcgaagaaacgaaagaaagaagaaaaggatgcagcg
atcaataagaaaaaattaacaaaggagagaaggctgaagagtttgcaagctgatgatcag
gatagtggagttgaggtgtattttagagaaaaagacgatgaccaagcaaagaaaaggggt
aaaagtgaggctgcagctccagaagagccaggcaggctacaggtagcatctgatttctcc
tgggacgtagtgctgagctcactcaaacctgcatcatctgtcgaaaacgcgtacgagtcc
agcgaagatgagccggacgatcataccaagacaacgaagaagtctcggcgggaggcggag
atggaacgtaaggaggcagagctcaagctcagcaaactggaggcggagcttatggagccc
tcggcccgaccggagagcactgaggcgtttgagcgactgctgctctcgtccccggactcg
tctctgctctggctgcagtacatggccttccagctacaggccacacagatcgagcaggct
cgcgctgtagccgagagagccctcaaaaccatctccttcagggaggagcaggagaagctg
aatgtgtgggtggctctgctcaacctggagaacatgtacggtactgaagagagccttcag
aaagtgtttgagcgagccattcagtactgcgagcccatgcctgtctaccagcagctggca
gatatttacaccaagtccagcaagatcaaggaagcagagaacttgtataagaacatggtg
aagcgcttcaggcaggagaaagccgtgtggcaaagctacgggtccttcttgctgcgtcag
ggacagagcgatgctgctaatgctctcctccagagagcactgcagagtctgtccaataaa
gagcatgtggacctgatagtcaagtttgctcggttggagttccaatatgggaacacagag
cgagccaaggcaatgtttgaaaaagtcctgagcagctaccccaagcgcacagacctctgg
tctgtctacatagacctgatgatgaagcacggctcacagaaagagatcagggctctcttt
gatcacgtggttcatctgagtgtgtcagtgaaaaagatcaagttcttcttcaagcgctac
ctggactacgagaagaagcacggcgaccccaagagcatccaagcagtcaagcaaaaagct
ctggagtacgtggagtcaaaaaggactgacgctgttaactag
DBGET
integrated database retrieval system
