Neoarius graeffei (lesser salmon catfish): 132866179
Help
Entry
132866179 CDS
T10798
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132866179 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngra03021
]
132866179 (taf5)
03036 Chromosome and associated proteins [BR:
ngra03036
]
132866179 (taf5)
Transcription machinery [BR:
ngra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
132866179 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
132866179 (taf5)
Chromosome and associated proteins [BR:
ngra03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
132866179 (taf5)
STAGA complex
132866179 (taf5)
TFTC complex
132866179 (taf5)
SAGA complex
132866179 (taf5)
SLIK complex
132866179 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
TFIID_NTD2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_EML
WD40_MABP1-WDR62_1st
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_Nup120_160
VPS8_N
PEP5_VPS11_N
PROPPIN
LisH_PAC1
RAB3GAP2_N
LisH_TPL
Motif
Other DBs
NCBI-GeneID:
132866179
NCBI-ProteinID:
XP_060754772
LinkDB
All DBs
Position
18:complement(38401340..38442732)
Genome browser
AA seq
737 aa
AA seq
DB search
MAAVHDGPSDVESEKETKPDILTDESAANLPGIMSGTLSSSPLAPPAAVVPKVEEQQQQT
LLAVLQFLKRNNLTESVDILRREAGIQDELVEEARGAEAAAPGLNSGHGDASSLLSRVSA
QSGAPAKGGEDQPDVSVVLSAYSQQGDPSLYQVYYSGLKKFIESVLDCHRAELSQLFYPL
FVHMYLELVYNNHENEAKTFFEKFSGDQECYYQNDLRVLSGLTKKEHMKGNETLLDFRTS
RFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSTSGSLAGEA
RREANKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDNMGSKSKKQDPNAPQ
QNRIPLPELKDSDKLDKIMYMKEATKRLRLGPESLPSICFYTFLNAYQGLTAVDMTDDSS
LIAGGFADSTVRVWSVTPKKLRKVKSAADLSLIEKESDDVLERIMDEKTASESKILYGHS
GPVYAVSFSPDRNYLLSSSEDGTIRLWSLQTFTCLVAYKGHNYPVWDTQFSAHGYYFVSG
GHDRVARLWATDHHQPLRIFAGHLSDVTCTRFHPNTNYVATGSADRTVRLWDVLNGNCVR
ILTGHKGPIHSLAFSPNGKYLASGSTDGRVLLWDIGHGLMIGELKGHSDTIYALKFSRDG
EILASGSMDNTVRLWDVTKAVDDVETDDFTAATGHIHLPDNSQELSLGTYLTKSTAVIHV
HFTRRNLLLAAGAYISQ
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtacatgatggaccgagtgatgttgagagcgaaaaagaaacaaaacctgat
attctgaccgacgagtcggcagcaaacctgcccgggataatgagcgggacgctgtcttca
tctccgctcgcacctcctgctgctgtcgtgccgaaagtggaagaacagcagcagcaaact
ttactcgctgtgctgcagttcctgaagcggaacaacttaacggagtcggtggatatcctg
cggcgcgaggcagggatacaggacgagctggtcgaagaagcgcgcggggcagaagctgca
gcaccggggctgaacagcggacacggagacgcgagctccctcctcagccgggtgtcggct
cagagcggcgccccggctaaaggtggagaggaccagccggatgtcagcgttgtcctctcg
gcgtacagtcagcagggggatccgtcactgtatcaggtgtactacagcgggctgaagaag
ttcatcgagtcagtgctggactgccacagggccgagctgtcgcagctcttctacccgctc
tttgttcacatgtacctggagctggtttacaacaaccatgaaaacgaagcgaagacattt
ttcgaaaagttcagtggtgaccaggaatgctactaccagaacgacctgcgtgtgctgtca
ggcctcaccaagaaggagcacatgaagggtaacgagaccctgctggatttccgcacaagt
cgcttcgtgctacgcatttcacgcgactcctaccagctgctgaagcgccatcttcaggag
cgccagaacaaccagatctggaacatcatccaggagcacctctacatcgacattttcgat
ggcatgccacgtagcaagagtcagattgacagcacgtccggcagcctggctggagaggct
cgccgagaggccaacaaagccaaggtgttctacggattgctgaaggagccagagatcgag
gtccctctcgacgatgaagatgaagaggctgagaatgaagagggcaaacccaaaaagaag
aaacccaagaaggacaacatgggttcaaaaagcaagaagcaggaccccaatgcaccgcaa
caaaacaggattcctctaccagaactaaaggactctgataaactggacaaaatcatgtac
atgaaagaggccacgaagagactgcgtctaggccccgagtcactgccctcgatatgcttc
tacacattcctcaacgcttaccagggtctgacagcagtggacatgacggacgactccagt
ctgatagcaggaggctttgccgattccacagtgcgtgtctggagcgtcacacccaagaaa
ctccgcaaggtcaaatctgctgcagatctcagtctcatagaaaaggagtcggacgatgtg
ttagaaaggatcatggacgagaaaacagccagcgagtcgaagatcctgtacggccacagc
gggccggtgtacgccgtcagcttcagtccagacaggaattatctgttgtcgagttcagaa
gatggcaccatcagactgtggagcttgcagacgtttacttgtctggtggcgtataaggga
cacaattacccagtgtgggacacgcagttctccgcacacggatactattttgtgtctgga
ggacatgaccgagtggcgcggttgtgggccactgaccaccaccagccgctgcgtatattt
gccggacatctctctgacgtcacctgcacccgcttccatccgaacaccaactacgtagcc
acaggctcagccgatcgcaccgtgcgcctctgggacgtcctgaacggcaactgcgtccgc
attcttactgggcacaagggaccaatccactcgttggcattctcacccaacggtaagtac
ctggcctccggctcaaccgatggcagagttctgctgtgggatatcggccatggactcatg
atcggcgaattgaagggtcacagcgacaccatctacgcactcaagttcagcagagacgga
gagattctcgcctcaggctccatggacaacacggtccggctgtgggacgtcaccaaagcc
gtcgacgacgtggaaacggacgatttcacagcagccactggtcacattcacttacccgac
aactctcaggagttatcactcgggacgtacctgaccaaatccaccgccgtcatccacgtc
cacttcaccagacgcaacctgctcctggccgccggcgcgtacatctcccagtga
DBGET
integrated database retrieval system
