Neoarius graeffei (lesser salmon catfish): 132866260
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Entry
132866260 CDS
T10798
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
132866260 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ngra04131
]
132866260 (vps8)
Membrane trafficking [BR:
ngra04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
132866260 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
Clathrin
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
WD40_CDC20-Fz
zf-RING_Vps41
zf-RING_5
zf-RING_UBOX
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_11
PHD_4
zf-C3HC4
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_HPS5
zf-C3H2C3
EIF3I
WDR55
Motif
Other DBs
NCBI-GeneID:
132866260
NCBI-ProteinID:
XP_060754928
LinkDB
All DBs
Position
18:complement(47313709..47728666)
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AA seq
1418 aa
AA seq
DB search
MSESPDARSLVSASSQINLMEIDAIDDKEFDIPQVDTPPTLESILNEPEDEDEPFVLEDT
CFLNTENVDAHSCETSSLASSDSGDRAHLKRRRKAVETNTAVHGSVLRRNVLKGISAQIV
SAADKVDAGLPTAITVSSVIAVGTSHGLALVFDQNQALRLCLGTTATGAEYGAVSALSIN
HDCTRLLCGFAKGQITMWDLANGKLLRIITDAHPPGTAILHIKFTDLPTLAVCNDSGGSV
FELSFRRVMGMRTCESRCLFSGSKGEVCCVEPLHAGPELKDHPITHYCLLAMASLTKILV
IGLKPSLKVWMTFPYGKTDPASVPQLAWQFVAAQKAVNPILAFCRGDTVHFLLVKKDESG
TVHVIKQRQLQLNCDLISVTWLNPRTLVLLDSAEKLHVLDRPSQEELESLDLAEVQLVYN
SSHFKSLATGGNVSQALALVGEKACYQSVCSYSGQIFYLGTKSVHIMTLRNWRERVDHLL
KQEKFTEALSLAWSFHEGTAKAVLGLFGDPAKRKGVVADKMVEILFQYVERSLKKCPEQG
KIQLLEQHFQDMIPVVVDYCLLLQRTDLLFNPIYSRLVENSVAKGVFLESLEPYILSERI
GCLTAPVMRDLLSYFQENGMMESVEGCLVHMDITNLDIQQVVQMCWDNQLYDAMMYVFNS
GMNDYISPMEKLFQVIGPPLREGKPLTDEQVVMGNKLLVYISCCLAGRAYPLGDIPEDLV
PQVKNQVFEFLIRLHSLEANQEEEVYPYIRTLLHFDTREFLNVLALTFEDFKNDKQALEY
QQRIVDILLKVMVDNSDFTPSQVGCLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCSPDD
DSRHTERQQVLLELLQVGGMVQFDEGRLLSLAEKAEFYQICEFLYEQKHLYDRIIACYLK
DPLRKEEVYSYIHNILSMPGYSQEEKQTAWNKSLEHIKELVSINPAKAAELVVSHFISKV
EPIITALQDDHLVFQFLGNLLNPSDGQMPQAVMNLGPELHELLVDLMCRFSPHQVTPFLE
TSKSYRLEETVEITKQHQLHEATAYLLEKKGDVQGAFQVLLQTLKEKLNTLVQESSEAAM
LRLAGEKEEVVDEECTPLARVEEALSDIIALCHRSSQGLNQQQREALWFPLLEAMMSPQK
YLKGPNTKDTSDALKELTMTVLNSMSGFIALPAIIQRILQDPVYGKGKLAEIQGLILGML
ETFNYEQTLLETTTNLLNSDLHWSLAHLRKAVSRGLHPRQDHCNICLQQYKRRQESEEEI
IIFSCGHLYHCQCLQRKEQGVVGKDSFAGDRVHSWSCYKCTSSQGARPGDRLLAEGGRAR
STSLAQTKVTSVHRGSAAETHHRKELTEVTLDAQQTQAWDQLRCMYRGPSRLAILTELTH
SHSSERAGLLNPAHPGTGSLYHSENLSLKLSPPPMVEE
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagtctccggatgctcgcagtctggtgtcggcgtcctcacagatcaatctcatg
gaaatagatgcaattgacgacaaagaatttgacatccctcaagttgacacaccaccaact
ttagagagtatcctgaacgagcctgaggatgaggatgaacccttcgtcctggaggacaca
tgctttttgaacacagagaatgtggatgcgcattcctgcgagacgtcctccctcgccagt
tcagacagtggagaccgtgcacatctaaagagaagaaggaaggcagttgagacgaataca
gctgtccacggctcagttctgagacgcaacgtgctgaaaggcatctcggctcagatcgtc
tccgctgctgacaaagttgacgcaggcttgccaactgcgatcactgtgtccagtgttatc
gccgtgggaacgtcacatggcctcgctctggtctttgatcagaaccaggcgctgaggctg
tgcttgggtaccacggcgacgggggcggagtacggcgcagtttcagctctcagtattaac
catgactgcacacgtctgctttgtggcttcgctaaaggacagatcaccatgtgggatttg
gcgaacgggaagctcctgcgcatcatcaccgatgcccacccacccggcacggccattttg
cacatcaagttcacagatctgccgacgcttgctgtgtgtaacgacagcggtgggtctgtg
tttgaactctcgttcaggcgggtgatggggatgaggacatgtgagtctcggtgtttgttc
agcggcagtaagggggaggtgtgttgcgttgaaccgctgcacgcaggccctgaactaaaa
gaccatcctattactcactactgtctgctggccatggcctcgctcaccaagattctggtg
attggactgaagccatctctaaaggtctggatgacgtttccatatgggaagacagaccct
gccagcgtgccccagttggcatggcagtttgtagctgcacaaaaagcagtgaaccccatc
ctcgccttctgtagaggagacactgtccacttcctgctggtgaagaaggacgaatcagga
actgtccatgtcatcaaacagcgacagctccaactcaactgtgaccttatcagcgtgaca
tggctgaatcctcgcaccctggtgttgctggacagcgcagagaagctgcacgtgctggac
cggcccagtcaggaggagctggaaagtctggacttggccgaggtgcaactcgtctacaac
agcagccattttaaatcgcttgctacagggggcaacgtcagccaggccctggctttggtg
ggagagaaggcatgttatcagtctgtgtgcagctacagtggtcagatcttctacctggga
acaaaatctgtccatattatgaccctcagaaactggagagagcgcgtcgatcatttattg
aagcaggagaagtttacagaggcgctctctttagcctggtctttccacgaaggcacagca
aaagcagtactgggtctgttcggcgaccctgccaagcggaagggagtagtagctgacaag
atggtggagatcttgttccagtatgtcgagcgctcgctaaagaagtgtcccgagcaggga
aagatccagctactggagcaacacttccaggacatgattcctgtcgtggtagattactgt
cttcttctgcagaggacggacctgctgtttaacccgatctactcgaggctggtggagaac
tctgtagctaaaggcgtcttcttggagagtctcgagccatacattctgagcgagcggatt
ggctgcctgacagcaccagtcatgagggacctcctcagttacttccaggaaaacgggatg
atggagagtgtggagggctgcctggtgcacatggacatcaccaacctggatatacagcag
gtggtgcagatgtgttgggataaccagctctatgatgccatgatgtacgtgttcaacagt
ggcatgaacgactacatcagccccatggagaaactctttcaggtgattggtcctcctcta
cgagaaggcaaacctctcacagatgagcaggtggtcatgggaaataagctacttgtctac
attagttgttgtctagcaggacgagcctatcctttaggggacattccagaagaccttgtg
ccacaagttaaaaatcaggtgttcgagttcctgattcgcctgcattcgttagaggccaac
caggaggaagaggtgtatccgtatatccggaccctgctgcacttcgacacccgcgagttt
cttaacgttctggcactgacatttgaggattttaagaacgacaaacaggctctggagtac
cagcaaaggattgtggacattttactcaaggtcatggtggataactcagacttcaccccg
tcccaggtgggctgcctgttcacttttctcgctcggcagctagctaaacctgacaacacc
ctcttcgtcaacaggaagttgtttgatcaggttctggagttcctgtgcagtccagatgat
gattccagacacacggagcggcagcaggtgctgttggagttgctgcaggtcggagggatg
gtccagttcgacgaggggcgtctcctcagcctggcagaaaaggcagaattctatcagatc
tgcgagtttttgtacgagcagaagcatctgtatgaccgaatcattgcctgctacctcaag
gaccccttaagaaaggaggaggtttatagctacatccataacatcctgtccatgcccggc
tacagccaagaggagaagcagaccgcatggaacaaatccttagagcacattaaagagctg
gttagtattaaccctgctaaagctgccgagctggttgtgagtcacttcatcagcaaagtc
gagccgattatcactgcactacaggatgatcatttggtgttccagttcctggggaatttg
ctgaatccaagtgatgggcagatgccccaggctgttatgaatctggggcctgagctgcac
gagctcctggtggacttgatgtgccgttttagtcctcaccaagtcacccctttcctcgag
acatccaagagctaccgcctggaggagaccgttgagatcaccaagcagcaccagctacat
gaggccacagcctacctgctggagaagaaaggagatgtgcagggagccttccaagtgctg
ctccagacactgaaggagaaactgaacacactggtccaggagagttcagaggcagccatg
ctgaggcttgcaggagagaaggaggaggtggtcgatgaagaatgtaccccattggcccgg
gtggaggaagccctgagtgacatcatcgcgttgtgtcacaggagctcacagggacttaac
cagcagcagagagaggctctctggtttcctctcctagaagcaatgatgtctccacagaaa
tacctcaaaggccctaataccaaggacacttctgatgccctgaaagagctcactatgacg
gtgttaaacagcatgtccggcttcatcgccctgcctgccatcatccagcgcatcctacag
gacccagtgtatgggaagggaaagctggcagagatccagggcctcattctgggcatgctg
gaaactttcaactatgaacagactctgttggagaccaccaccaatcttctgaactcggac
ctgcactggtctctggctcacctgcggaaggccgtcagcaggggactccaccctcgacag
gaccactgcaacatctgcctgcagcagtacaagaggaggcaagagagtgaggaggagatc
atcatcttcagctgtggtcacctgtatcactgtcagtgcctgcagcggaaggagcagggg
gttgtggggaaagattcatttgcaggagatcgggttcactcgtggagctgttataagtgc
acgtccagtcagggagctcgtcccggagaccggctgctcgctgagggaggccgagcccga
tccacttctctggcccagaccaaagtgacatccgtccatcggggatccgccgccgagact
catcacaggaaggagctgactgaagtgacgctagacgcgcagcagacgcaggcgtgggac
cagctgcgctgcatgtacagaggaccctccagattggcgatcctcacagaactcacacac
tcccacagcagcgagagagccggcctgctgaaccccgcccacccaggaacaggaagcctc
tatcacagtgaaaacctcagcctcaagctttctccaccaccgatggtggaggagtag
DBGET
integrated database retrieval system
