Neoarius graeffei (lesser salmon catfish): 132866341
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Entry
132866341 CDS
T10798
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132866341 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngra03021
]
132866341 (taf5l)
03036 Chromosome and associated proteins [BR:
ngra03036
]
132866341 (taf5l)
Transcription machinery [BR:
ngra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
132866341 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
132866341 (taf5l)
Chromosome and associated proteins [BR:
ngra03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
132866341 (taf5l)
STAGA complex
132866341 (taf5l)
TFTC complex
132866341 (taf5l)
SAGA complex
132866341 (taf5l)
SLIK complex
132866341 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
TFIID_NTD2
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
ANAPC4_WD40
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
RMC1_N
Beta-prop_HPS5
Ge1_WD40
Beta-prop_WDR19_1st
Cytochrom_D1
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
132866341
NCBI-ProteinID:
XP_060755056
LinkDB
All DBs
Position
18:57553023..57560617
Genome browser
AA seq
624 aa
AA seq
DB search
MLFWVIINILIDVQDILIKVMKRGRTEQIQHAVVQYLKRRQYVDVDGSLKGAKLSQSAEE
MATNLMVQTESSCANVVSAAPCQSDPQQYETQFSRLCSFLLEAEAPLGREVSSVLFPLFL
YLHLDMARCGLKGAVDSFFSRFHSSFQQDAEQRAIVEHLRGVVTPQDVASNSKLCSLLEH
KYVVHLTDEAYTYLLRYLQSDDNSALCRVFSTHLQVEVSAARRSDYQLYRAGLTTGNTTS
TSCSSGWLGMDGTEGAESVDVTAGLPPQNEAAMEALQDCIKRVREGPPSLTTVCFYAFEN
TEQLLNAAEVSPDSRLLAAAFDNSALKLWSLRARKLKAGPCRANVSKIRLACDLVEEETE
EEEMGSEMKTLRGHSGPVYGAAFLRDSSGLLSCSEDCTVRYWELRGFSNAAVYQGHAYPV
WDIAVSPCGLYFCTASRDTTARLWTPARAHPLRLYAGHLADVDCVRFHPNSSYVATGSTD
RTVRLWSTQHGGSVRLLTGHRGPVLALAFSPDGRYLVSAGEDQRLRLWDLAAGGILKELR
GHTGAITSLAFSPDSSLIASAAQDNSVRVWDVRNAHGGGAVPPDGSSPELVGVYTGETSS
VLNVQFTACNLLLVTGTAQEKHEQ
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgctcttctgggtgataataaacatcctgattgatgtacaggacattctgattaaggtg
atgaagcgtggccggacggagcagatccagcatgctgtggtgcagtacctgaagagacga
caatatgttgatgtggatggttcgctgaaaggcgccaagctgtctcaatctgccgaggag
atggccaccaacctcatggttcagacggagtcgagctgcgcgaatgtggtttctgcagct
ccgtgccagtcagaccctcagcagtatgaaactcagttctccaggttatgcagctttctg
ctggaggcagaggcgccgctggggcgggaggtgagttcggttctcttccctctcttcctc
tacctgcacctggacatggcgcgctgtggcctgaagggcgccgtcgactccttcttcagc
cgcttccactcctccttccagcaggacgctgagcagagagccatcgtggagcatctccga
ggagtcgtcacgccgcaggacgtggcctccaactccaaactgtgctctttgttggagcat
aagtatgtggtgcacctgacggatgaggcctacacttacctgctgcgctaccttcagagt
gatgacaacagcgccctctgcagggtgttcagtacacaccttcaggtggaggtttctgcc
gcgcgtcgctctgactaccagctctacagggcggggctcactacaggaaacaccacctct
acgtcctgttccagcggctggctgggcatggacgggacagaaggggcggagtcggtagac
gtcacagcagggttgccgcctcaaaacgaggctgccatggaggcgcttcaggactgcatc
aagcgtgtacgcgagggtcctccgtccctcacgaccgtctgcttctacgccttcgaaaac
acggagcagttgttgaacgccgccgaggtgtcaccggacagccgcctgctcgctgctgct
tttgataactccgccctcaagctgtggagcctccgagccaggaagctgaaggcagggcct
tgtagggccaacgtgtccaagatacgcctcgcctgcgacctcgtggaggaggagacagag
gaggaagagatgggcagtgagatgaaaaccctgcgcggtcacagcggcccggtgtacggt
gcggcgttcctgcgtgactcctcaggtctgctctcgtgctccgaggactgcacagtgcgc
tactgggagctgcgtggtttcagcaatgctgccgtgtaccaaggccacgcctacccagta
tgggacatagcagtgagtccgtgcggtctgtatttctgcacggcgtcacgcgataccacg
gcacgtctctggactccggctcgcgctcacccgctgagactttacgccgggcacctggcc
gacgtcgactgcgtgcgtttccacccaaactcaagctacgttgctacgggatcgaccgac
aggaccgtccggctgtggagcacgcagcacggcggctcagtgcgcctcctgacaggacac
cgaggtcccgtactggcgctcgccttctcgcctgacggcaggtatctggtgtccgcaggc
gaggaccagcggttgcggttgtgggacttggcagcaggtggcatactgaaagagctgcgt
ggacacacgggcgccatcaccagcctggcgttcagcccggacagctcgctcatcgcctcg
gccgctcaggataactcggtgcgtgtctgggacgtacggaacgcccacggtggaggcgcg
gtacctccggacggctccagccccgagctggttggagtttacacaggagagacgagcagc
gtccttaacgtccagttcaccgcctgtaacctgctgctggtcaccgggacggcgcaggag
aaacacgagcagtga
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