Neoarius graeffei (lesser salmon catfish): 132866746
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Entry
132866746 CDS
T10798
Symbol
sox1b
Name
(RefSeq) transcription factor Sox-1b isoform X1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ngra03000
]
132866746 (sox1b)
Transcription factors [BR:
ngra03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
132866746 (sox1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
132866746
NCBI-ProteinID:
XP_060755510
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All DBs
Position
18:complement(44151676..44152713)
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AA seq
342 aa
AA seq
DB search
MYSMMMETDLHSPAPQTNTSAGPNAAGKLNQERVKRPMNAFMVWSRGQRRKMAQENPKMH
NSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDKYSL
AGGLLTSSTSGGGVTLGMSTAQRLESPAGHGGGGAGAASYAHVNGWANGAYTAAAAAAMM
QEAQLAYGQHASAGAAHHHGHHPHHHGHHHPHHQHAASAQSVHRYDMSALQYSPMSNSPS
YVSASPSTYAAMSYTQHQSSVSAAAGSVGTLGSLVKPEPSASPPLGAASRAPCPGDLREM
ISMYLPAAEAGDAAVQSRLHALPQHYQSTAAAINGTVPLTHI
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagacggacttgcattccccggcaccccaaacaaacacgagt
gcggggccaaacgctgcagggaaactgaaccaggagcgcgtcaagcgccccatgaatgcg
ttcatggtgtggtcccgtgggcagcgacggaagatggcacaggagaaccccaaaatgcac
aactcggagatcagcaagaggcttggggccgagtggaaggtcatgtcggaggcagagaag
cggcctttcattgatgaggcgaagcgcctgcgcgctatgcacatgaaggagcatccggat
tacaagtaccggccgcgcagaaagaccaaaactctgcttaaaaaggacaaatactctctg
gccggcgggctgcttacaagttctaccagcggtggcggggtgactctgggtatgagcacg
gcgcagaggttggagagtccggcgggtcacggcggcggaggcgcaggcgcggcgagttac
gcgcacgtgaacggctgggcaaacggtgcgtatacagcagccgcggctgcagccatgatg
caggaggcgcagttagcctacgggcagcacgcaagcgctggggccgctcaccatcacgga
caccacccgcatcaccacggacaccaccacccgcaccatcagcacgccgcaagcgcgcag
tccgtgcaccgctacgacatgagcgcgctgcagtacagccccatgtcgaactctccgagc
tacgtaagcgcctcgccgtccacctacgccgccatgtcgtacacgcagcaccagagctcc
gtctcagcggctgcaggaagcgtcggcacgctcggatcgctcgtgaagcccgagccgagc
gcaagccctccgcttggcgccgcgtcccgcgcgccctgtcccggtgacctgcgcgagatg
atcagcatgtacttaccggcggcggaagctggagacgcggctgttcagagcagactgcac
gcgctgccgcaacactatcagagcactgcagctgccattaacggaaccgtcccactgacg
cacatttaa
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