Entry |
|
Symbol |
sox1b
|
Name |
(RefSeq) transcription factor Sox-1b isoform X1
|
KO |
K09267 | transcription factor SOX1/3/14/21 (SOX group B) |
|
Organism |
ngra Neoarius graeffei (lesser salmon catfish)
|
Brite |
KEGG Orthology (KO) [BR:ngra00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:ngra03000]
132866746 (sox1b)
Transcription factors [BR:ngra03000]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
132866746 (sox1b)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
18:complement(44151676..44152713)
|
AA seq |
342 aa
MYSMMMETDLHSPAPQTNTSAGPNAAGKLNQERVKRPMNAFMVWSRGQRRKMAQENPKMH
NSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDKYSL
AGGLLTSSTSGGGVTLGMSTAQRLESPAGHGGGGAGAASYAHVNGWANGAYTAAAAAAMM
QEAQLAYGQHASAGAAHHHGHHPHHHGHHHPHHQHAASAQSVHRYDMSALQYSPMSNSPS
YVSASPSTYAAMSYTQHQSSVSAAAGSVGTLGSLVKPEPSASPPLGAASRAPCPGDLREM
ISMYLPAAEAGDAAVQSRLHALPQHYQSTAAAINGTVPLTHI |
NT seq |
1029 nt +upstreamnt +downstreamnt
atgtatagcatgatgatggagacggacttgcattccccggcaccccaaacaaacacgagt
gcggggccaaacgctgcagggaaactgaaccaggagcgcgtcaagcgccccatgaatgcg
ttcatggtgtggtcccgtgggcagcgacggaagatggcacaggagaaccccaaaatgcac
aactcggagatcagcaagaggcttggggccgagtggaaggtcatgtcggaggcagagaag
cggcctttcattgatgaggcgaagcgcctgcgcgctatgcacatgaaggagcatccggat
tacaagtaccggccgcgcagaaagaccaaaactctgcttaaaaaggacaaatactctctg
gccggcgggctgcttacaagttctaccagcggtggcggggtgactctgggtatgagcacg
gcgcagaggttggagagtccggcgggtcacggcggcggaggcgcaggcgcggcgagttac
gcgcacgtgaacggctgggcaaacggtgcgtatacagcagccgcggctgcagccatgatg
caggaggcgcagttagcctacgggcagcacgcaagcgctggggccgctcaccatcacgga
caccacccgcatcaccacggacaccaccacccgcaccatcagcacgccgcaagcgcgcag
tccgtgcaccgctacgacatgagcgcgctgcagtacagccccatgtcgaactctccgagc
tacgtaagcgcctcgccgtccacctacgccgccatgtcgtacacgcagcaccagagctcc
gtctcagcggctgcaggaagcgtcggcacgctcggatcgctcgtgaagcccgagccgagc
gcaagccctccgcttggcgccgcgtcccgcgcgccctgtcccggtgacctgcgcgagatg
atcagcatgtacttaccggcggcggaagctggagacgcggctgttcagagcagactgcac
gcgctgccgcaacactatcagagcactgcagctgccattaacggaaccgtcccactgacg
cacatttaa |