Neoarius graeffei (lesser salmon catfish): 132868255
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Entry
132868255 CDS
T10798
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ngra01001
]
132868255 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ngra04054
]
132868255 (ciita)
Enzymes [BR:
ngra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
132868255 (ciita)
Protein kinases [BR:
ngra01001
]
Serine/threonine kinases: Other
TAF1 family
132868255 (ciita)
Pattern recognition receptors [BR:
ngra04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
132868255 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
nSTAND3
LRR_8
AAA_25
AAA_16
Motif
Other DBs
NCBI-GeneID:
132868255
NCBI-ProteinID:
XP_060757072
LinkDB
All DBs
Position
20:complement(2332193..2374442)
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AA seq
1143 aa
AA seq
DB search
MVPFQEVLSKVRRVLQEVNPNLLPSLLTQLVEAQIFSAQYYQSFFVENLSNVDVDDLARR
LALPIWAKWEAGKVILSSVLMENESNVHEPEDINVDLGETTPDRLLDLIVSTPLENFAFE
EFLDSNYSDEVFDNIQDGPEDKCTMGCEVWNKNFSARRTRKRQGVSERASRKTPRPKRNK
TAPKSSESSPEVNMSVQEGDFHVTSMSSVVRIPLTIAPNASLMPSGVPAMQIIQTCNPIS
SPVIKSILPVGHTYLLVSPQSLAPVPAPQFAPLSPVDGTVAPSELSVSINPVSSLSDSMS
RGQSPSQLAPVSPSKDTSPSKEYLPATQEIKKMPVIPKNVQDFIEHLKSHLGEMCSMMQG
GMIMESHYIDTPLVQRKLIIRTGKNANKCLEKELVVLSDSERKKAMMHRSHVFQNCGSNN
KHLITILGKAGMGKSTFVQRLALDWSTGGLQQFQFIFLLNCKVLNLTQASFSLKSLLFDS
SMSPRCEDSEAVFKHVLSFPENVLIVFDSFDDMKDLEGLLQSPATSATDGNYSIRQLFSG
LFQKKILSGCTLLIATRPKDVLNQLLRKVDSILELSCFSPKDIEMYVSNYFRDVSEKVDA
LRRIKNQKYIFSLCSNPLLCRLTCFLSEHQKRKDDPLPSTLTDLYQIVLNQHRELNDNLQ
GSKQNIVQLCNVAWDGFKTQNSLLNQNQNKKLVDYGLSSGILMTQTQCEEHGNNQVTYFV
NLFVQNLLSALHLVHSSELNDKTLLAQTTFHQRKRKSQGEWQDMLQRFIMGLLFQKNTSY
CCRYFQTSTDLQAKRKAVETHLENLKPDKLIPSRLLELFHCVYETRNVKLAKLLVKNLPD
NLSFCGAQLSPVDVYVVWHLFFHTKGHKQTFSIDLRDTCVPLSGLKDLVALDCVASFRAP
TMDTIHLWEDLHHSNDKLSLKTAIEKFTINPLKVSRVSHVENLVILVQIHNEKKLPLCEA
EPALEDGIPAVRHLHKLEYELGQQNGPKVFLRLMEILPALQSLHHLDLENNKLGDMEAEH
LAGVLSSLSSLKLLNLSQNCIGDGGVRKLSKALTSVSSLQSLSLYGNVIGDSGAESLASV
LPLMTSLLHLDAKYNKFTDIGAKKLSAALKDSPSVKSLQMWNDCIPYGVFEHLQIQDCRI
KAQ
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggtgcctttccaagaggttctatcaaaggtgaggagggttctgcaggaggtgaacccg
aacctccttccgtcacttctcacccagcttgtggaggctcagatcttctcagctcagtac
taccagagcttttttgtggagaacctgagcaatgtggacgtggatgacttggccaggaga
ctcgctcttccaatttgggcgaaatgggaagccggcaaagtaatcctctcctcagtgctc
atggagaacgagtcaaatgtccatgaacctgaagacatcaatgtagatcttggggaaacc
acccctgatcggctattagacctcatcgtctccactccgcttgaaaattttgcatttgaa
gaatttctcgattccaattactcagacgaggtcttcgacaatatccaagatggaccagaa
gataaatgcacaatgggatgtgaagtttggaacaagaatttctctgccaggcgaaccagg
aagcgtcaaggagtgagtgaaagagcatcaaggaaaacacctcgcccaaaacgcaataaa
accgccccaaagagctctgaaagctcccctgaagtcaacatgtctgtgcaagaaggggat
ttccatgtcactagcatgtcctcggtcgtacgcatccccttaacaatcgcccccaacgcc
tctctgatgccatctggtgtgccagcaatgcagatcatacaaacatgcaatcctatctct
tctccagtgataaaaagcattctgcccgttgggcacacctatttgttggtttcgccacag
tctctcgctccagtgccagcaccacagtttgcccctctgtcacctgtcgatggtacagtg
gctccttcggagctcagtgtgtccattaatcccgtaagctcattatcggacagcatgagt
aggggtcagtctccatcccaacttgctcctgtctccccctcaaaagacacatcgccctcc
aaagagtatcttcctgcaacccaggaaatcaagaagatgccagtaataccaaagaatgtt
caagacttcatcgagcacttgaagtcacacctaggagaaatgtgcagcatgatgcaagga
ggaatgatcatggagtctcactacatagacacaccactggtgcaaaggaagcttataatc
aggactggaaagaatgcaaacaaatgtttagagaaggaacttgtggtgctcagtgactca
gagcgaaagaaagccatgatgcacaggagccatgttttccaaaactgtggatctaataac
aagcacctgattaccatccttgggaaagctggcatgggaaaaagcacatttgtccagcgt
ttggccttggactggtccactggtggccttcagcagttccagttcatctttttgctgaat
tgcaaggttctcaatttgactcaggctagcttcagtttgaagagtttgctatttgactca
tccatgtctcctcggtgtgaagattctgaggctgtcttcaaacacgttctctcctttcca
gagaacgttctcattgtttttgacagtttcgatgacatgaaagaccttgaaggtcttctt
caatcccccgctacctcagccacagatggcaactacagtatcaggcagctattttctggt
ttgttccagaaaaagattctgtcagggtgcactcttttgatcgccacccgacccaaagat
gtcttgaatcagctgctgcgtaaagtagacagtatcttggagttaagttgcttttctcca
aaggacatagaaatgtatgtttcaaactatttcagggatgtttcagagaaagttgatgca
ctaagaagaatcaagaaccaaaaatacattttcagcttatgctcgaaccctttgctgtgt
cgccttacgtgctttttgtcagagcatcaaaaaagaaaagatgatcctttgccatctact
cttacggatttatatcaaatagtgctcaaccagcatcgagagctgaatgataaccttcag
ggatccaaacagaacattgtacagttgtgtaatgtagcatgggatggatttaagactcaa
aactcccttttaaaccaaaatcaaaacaaaaagctggtagattatggactcagctctggg
attctgatgacacagacacaatgcgaagaacatggcaacaaccaggtcacttattttgtt
aatctttttgtgcagaaccttctaagtgccctgcatttggtacattccagtgagctgaat
gataaaactctgctggctcagaccacattccaccaacggaaaaggaaatctcaaggagaa
tggcaggatatgctacaacggttcataatgggattactgtttcagaaaaacacatcctac
tgttgtaggtatttccaaaccagtactgacctacaggccaaaagaaaagcggtggaaact
catctggagaatctgaaaccagacaagctgattcccagcaggttactggaactatttcac
tgtgtgtacgaaaccagaaatgtcaaactcgccaaacttctggtcaaaaaccttcctgac
aatctgtcgttttgtggagctcagctctctccagtggacgtctatgttgtttggcatctt
ttcttccataccaaaggacacaaacagactttttctattgacctgagggacacctgcgtt
ccactcagtggtctcaaagacctggtcgcgctggactgtgtggcatcattccgggcacct
acgatggacaccattcacctgtgggaggacctgcatcacagcaacgataaactgagtttg
aaaactgccattgaaaagtttactataaacccactgaaggtgtctcgggtgtctcatgtg
gagaacctggtcattcttgtccaaatccacaatgagaagaagctgcccttatgcgaggct
gagccggctctggaggacggcatcccagcggtgaggcatcttcacaagctggagtacgag
ctcggccagcagaacggccctaaggtttttctccggctgatggagatcttacctgctctt
cagtctcttcatcacctggatctggagaataataaactgggggacatggaagctgaacat
ttggctggtgtgctgagctcgctgtcatctctgaagctgctgaatctttctcagaactgc
atcggagatggtggagtgcggaaactgtccaaagccctgacctctgtgtcctcactgcag
agcctcagcctgtatggaaacgtgatcggggacagcggagctgagagcttggcgtcggtt
ttaccgctcatgacgtctctgctccacctggatgcgaagtacaacaagttcacagacatt
ggagccaaaaagctcagtgctgcattaaaggactcgccaagtgtgaaatctcttcaaatg
tggaacgactgtattccttatggagtttttgagcatcttcagattcaagactgcaggata
aaagcgcaataa
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integrated database retrieval system
