Neoarius graeffei (lesser salmon catfish): 132868583
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Entry
132868583 CDS
T10798
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132868583 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngra03041
]
132868583 (ddx5)
03009 Ribosome biogenesis [BR:
ngra03009
]
132868583 (ddx5)
Enzymes [BR:
ngra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132868583 (ddx5)
Spliceosome [BR:
ngra03041
]
Complex A
U1 snRNP components
U1 related factors
132868583 (ddx5)
Complex B
132868583 (ddx5)
Ribosome biogenesis [BR:
ngra03009
]
Eukaryotic type
Pre-60S particles
Helicases
132868583 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
132868583
NCBI-ProteinID:
XP_060757557
LinkDB
All DBs
Position
20:complement(35031487..35038190)
Genome browser
AA seq
622 aa
AA seq
DB search
MPGYSDRDRSRDRGSYGSSYNSGPPRFGGSRAGPASGKKFGSPGDRLRKKHWNLAELPKF
EKNFYQEHPDVAHRPSQEVEQYRRSKEITVKGRDCPKPTIRFHEASFPSYVMDVINKQNW
TNPTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLA
PTRELAQQVQQVAMEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEA
GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL
KDYVQINVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFVETKRRC
DDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVI
NFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNFKQAHDLVSVLREANQAINPKLIQM
AEDRGGRSRGSRGGGYRDDRRDRYSGGRRDYNYNQDSRGGDRSYDNGPKKAFNKTQNGTM
YNGGANNYNGNSSNGFNGPYNGQSNFNGNQAGNFGNQGFQNKQFGANQGAAQNGANHNTP
FPFNPQQQQPMMPFSMPPPNFP
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgcccggatattcggatagagaccgtagccgtgacagaggcagttatggaagcagctac
aacagcgggcctccgcggttcggagggagtcgggccggtccggcgtccgggaagaagttc
ggcagtccgggagacagactgcggaagaaacactggaacttggccgagctgccgaaattc
gagaagaacttctaccaagagcacccggatgtagcgcacaggccatcgcaagaagttgag
cagtacaggaggagcaaagagatcacagtcaaagggagagactgtcccaaacctacaatt
aggtttcacgaggccagctttccttcttacgtcatggatgtgattaataaacagaactgg
accaatccaacccctatccaagctcaggggtggccactggcgttaagtggcaaagatatg
gttggcattgcccagaccggatctgggaaaactctttcgtatttgcttcctgctattgtg
cacataaaccaccaaccattcctggagcgtggcgatggacctatttgcttggtgttggct
cccactcgtgagttagctcaacaagtccaacaggttgcaatggagtacggcaaagcttct
cgcctcaagtccacctgcatctatggaggagctcctaaaggacctcagattcgtgacctg
gagaggggggttgagatctgcattgctactccagggaggcttattgacttccttgaagct
ggaaagacaaatctgcgcaggtgcacttatctggtgttggacgaggctgacaggatgctg
gatatgggctttgaacctcaaatccgtaaaattgttgaccaaatcaggccagacaggcag
actctgatgtggagtgctacctggcccaaagaggttcgtcagctggctgaggacttcttg
aaagattatgtccagatcaatgtgggagctctgcagctcagtgccaaccacaacatcctg
cagatagtggatgtatgtaatgatggcgagaaggaggacaagttgctgcgcctgctagag
gagatcatgagtgagaaggagaacaagaccatcatctttgtagaaactaagaggaggtgt
gatgacctcacaaggaggatgcgcagggatgggtggcctgcaatgggtatacatggagac
aaaagccagcaggagagagactgggtcctcaatgaattcaagtttggcaaagcacccatc
ctcattgcaactgacgtggcatcgagaggcctagatgtcgaggatgtgaagtttgtaatt
aatttcgattatcccaacaactctgaggattacatccatcgcattggccgcacagcacgt
agccagaaaactggaacagcctacaccttctttacacccaacaactttaaacaggcgcat
gaccttgtctctgtcctccgtgaagccaatcaggccatcaatcccaaactcatccagatg
gcagaagacagaggaggtcgttcaaggggcagtcgaggtggcggatatagagatgatcgc
cgggatcgttactccggaggcagacgggactataactacaaccaagacagtcgtggcggt
gatcgcagttatgataatggaccaaagaaagccttcaataagacacagaatgggacaatg
tataatggtggggccaacaattacaatgggaacagcagtaatggctttaatgggccttac
aatggacagtccaactttaatggcaatcaggctggtaattttggaaaccaaggcttccag
aacaagcagtttggggccaaccagggagctgctcagaatggtgcgaatcacaatacaccg
tttcccttcaatcctcaacagcagcagcccatgatgcccttttccatgcctcctcctaac
ttcccttag
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integrated database retrieval system
