Neoarius graeffei (lesser salmon catfish): 132868797
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Entry
132868797 CDS
T10798
Symbol
dhx58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
132868797 (dhx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ngra04054
]
132868797 (dhx58)
Enzymes [BR:
ngra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132868797 (dhx58)
Pattern recognition receptors [BR:
ngra04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
132868797 (dhx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
NLRC4_HD2
AAA_22
Motif
Other DBs
NCBI-GeneID:
132868797
NCBI-ProteinID:
XP_060757969
LinkDB
All DBs
Position
20:53595588..53620070
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AA seq
681 aa
AA seq
DB search
MGDISLRPYQQEVVQAALRGKNSIIWLPTGGGKTRAAVYVAKKHLETHPNAKVAVLVNKV
HLVDQHFKNEFQPLLDSSVKMVPISGDSSEKDFFGYVVRDSSLVICTAQILENALKNTEE
GKHVELTDFTLLIIDECHHTHKEGVYNKIMARYVKMKITGVTGLPQILGLTASPGTGGAR
TLDGAIKHVLEICANLDSIIVSTEYNKTELKHVVPRPMKNYDIVDVRHYDPFGDHLKMMM
TLIHEFMSLDKHEFTLRQMGTQEYEADVVELEKLGVQEEDRLLTRCALHLRKFNDALLIN
DTVRMVDALRLLEEFYATEERNVLDITDQFLTGLFNENRVELRQLASNELNENPKLEQLQ
RTLVNQFQDKNSRGIIFAKTREITRCLYNWVSANPELKRAKIRAANLVGAGNGATHMTQR
EQKDTIQTFRDGNLNLLISTSVAEEGLDIPECNVVIRYGLLTNEIAQQQASGRARAKNSV
YSVVAQIGGREMRREKTNEYLEQLTGRAIAHVQSMEPREFRRKIIELQQEAIAVRHLEAE
QMERRRLRYAADEVEFNCRGCFRAVARGDDMRLVNGTQHVNINRDFPKFYKVGGKVHLER
TFEDWEPGCTILCATCGQNWGMEVKFKNVVLPCLNIKSFSMKTPQGSRTTKQWKKVEFLV
EDFDFLKYVETQNPDLESLFD
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgggggacatatcgctgaggccgtaccagcaggaggtggtccaggctgctctgcgaggg
aagaatagcatcatctggctgcccacaggtggaggaaagactcgggctgctgtctacgtg
gccaagaagcacctagagactcaccccaatgccaaagtagccgttctcgtcaacaaggtg
cacctggtggatcagcactttaaaaacgagttccagccccttctggatagctcagtgaag
atggtgccaatcagcggggacagtagcgagaaggactttttcggctacgtggtcagggat
tcgagcctggtcatctgcacagctcagatcttggagaatgccttaaaaaacacagaggag
ggcaagcatgtggagctcacagacttcacgctgctgatcattgacgagtgccatcacact
cataaggaaggggtgtataataaaatcatggcacgctacgtgaaaatgaagattacaggc
gtgactggtctgcctcagatcctgggcctgacagcctcaccgggtaccggaggagccaga
acgctggatggtgccatcaaacacgtgctggagatctgcgcaaacctggactccattatc
gtgtcgactgaatataataagacggagcttaaacacgtcgtccccagacctatgaagaac
tatgacattgtggatgtgcggcattatgacccatttggtgatcatctgaagatgatgatg
acgctgattcacgagttcatgtcgttagacaagcatgagttcactctgcggcagatgggc
actcaggagtatgaagctgatgtggtggagctggaaaagctaggtgtgcaggaggaggac
aggttgttgacacggtgtgctctccacctgcgaaaatttaacgacgctctgctcattaac
gacactgtgcgcatggtggatgctctgaggcttctggaggagttctacgccacagaggag
agaaacgtgctggacatcactgatcagttcctcacaggactctttaatgagaacagagtg
gagctgaggcagctggcgtccaatgagttaaatgagaatcccaagctggaacagctgcag
cgcaccctggtgaaccagttccaagacaagaactctcgtggtatcattttcgccaaaacc
cgtgagatcacacgctgcctgtacaactgggtgtctgcaaacccagagctgaagcgtgcc
aagatccgcgctgccaatctggtcggagcaggaaatggcgccacccacatgacacagagg
gagcaaaaagataccattcaaacatttcgagacggcaacctcaacctcctcatctcgacc
agcgttgctgaggaaggcctcgacatcccagaatgcaacgtggtgattcgctacgggctt
ctgaccaatgagatcgcgcagcagcaggccagtgggcgggccagagccaagaacagcgtc
tattcagtggtggcacaaataggcgggcgggagatgcgcagagagaagaccaatgagtat
ctggaacagctaactggcagggcgatcgctcatgtacagagcatggagcccagggagttt
cgcagaaagatcatcgagctgcagcaggaggcaatagctgtgcgccacctggaggccgag
cagatggagaggaggaggctccggtatgccgctgatgaggttgagttcaactgccgtggc
tgcttcagggccgtcgcccgtggagatgatatgagactcgtgaacggcacacagcacgtc
aacatcaaccgagattttccgaagttctataaggttggagggaaagttcatcttgaacgg
acatttgaagattgggagccaggttgtaccattctctgcgctacatgtggacagaattgg
ggaatggaggtgaagttcaagaacgtggtgttgccgtgtctaaatataaagagcttttcg
atgaagactcctcaggggagccgcacaaccaaacagtggaagaaggtcgagttcctagtg
gaagattttgacttccttaagtatgtggaaacacagaaccctgacctcgagtctttattc
gactga
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