Neoarius graeffei (lesser salmon catfish): 132869478
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Entry
132869478 CDS
T10798
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03015
mRNA surveillance pathway
ngra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132869478
09123 Folding, sorting and degradation
03018 RNA degradation
132869478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132869478
03041 Spliceosome [BR:
ngra03041
]
132869478
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132869478
mRNA cycle factors
Stress granule specific factors
132869478
Spliceosome [BR:
ngra03041
]
Complex C
Other components
Complex C specific factors
132869478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_RdRP1_2
RRM_3
RRM_MARF1
RRM_occluded
RRM_10
Motif
Other DBs
NCBI-GeneID:
132869478
NCBI-ProteinID:
XP_060758717
LinkDB
All DBs
Position
2:complement(45711342..45715966)
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AA seq
511 aa
AA seq
DB search
MLEEMLSAAGPVHSIHLCRDRKTGSSRGYACVNFLYRADAERALESFDSELLMGRPIQMA
WSQREPPAKNTGIGNLIIRNLDKSIDSMSLFDLLSIFGTVLSCKVVGDEKGSKGYAYVHY
QSADAADLAIEKLDGKLLNDRQVFIEHVKVSEQHEAEADPWSQLFTKIYIRNLGEDVNNK
QLNTVFSKFGSVLSVHVVKDESGKSRGFGFVRFARHEDAQRAVAVMNGRVLNGRRVHVSR
AQTKEERQAQLRQKSEQGLKDREVMNDGNPVYLGVAQRKQEHQTYLAPQQRVASVEPNAA
LNIHQPVLPPCSIPNTIPETGGTKKSPAVARVPPKESAQAVQRESSVESVPAVETAPAVN
GTPVVVLVPVKDLPATTDAAPSTAVAPVGEVQPNKDTTDVSTYPPAGKRLTIYMLESSPV
HEQVKMAYDSMLPLVQKIHPNLANKITWMLVESENNYEIMNMIGDPELLRARVNKMDAVL
KAREAGLKPETIKMLFNDKNKKRKMNKRKNY
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgctggaggagatgttgagtgctgcaggacccgttcactccatccatctctgcagggac
aggaagactggctcctcacgcggctacgcttgcgtcaattttctgtatcgagccgatgcc
gagcgagcgctggaaagctttgactctgagctcctgatggggcggcccatacagatggcg
tggtctcagagggagccacccgcaaagaacaccggcattggaaacctcatcatcaggaac
ttggataagtccattgacagcatgtccctgtttgaccttttgtccattttcgggacggtc
ctgtcgtgcaaggttgtaggtgatgagaagggctcaaaagggtacgcctacgtccactac
cagtctgctgacgcagcggatttggcgatagagaagctggatggaaaactgctgaacgac
cgtcaagttttcatcgaacacgttaaggtcagcgagcagcacgaggctgaggcggacccc
tggtctcaactgttcaccaaaatttacatcagaaacctgggtgaagacgtgaacaataag
cagctgaacaccgtcttcagcaagttcggatctgtgctgagtgttcacgtagtgaaagat
gagagcgggaagtccagaggcttcggctttgtgaggtttgcgaggcacgaggatgcacag
agggctgtggctgtgatgaacggaagggtgctgaacggtagacgggtgcacgtgagccga
gcacaaactaaagaagagagacaagctcaactcaggcagaagtctgagcagggtctgaag
gacagggaggtgatgaacgatgggaatccagtgtacttgggcgtggctcagaggaagcag
gaacaccagacttaccttgcccctcagcagagagtggcgagcgtggagccaaacgctgca
ctgaacatccaccaacctgtgctgcctccctgctccatcccgaacaccattcctgagacc
ggtggcaccaaaaaatctccagctgtagccagagtcccacctaaagaaagtgcccaagct
gttcaaagagagtcgtctgtggaaagcgtgccagctgttgagacagctccagctgtaaac
ggtactccagttgtggttctggttccagtgaaagatcttccagccacgactgatgcagcg
ccttctacagctgtggcacctgtgggagaagttcagccgaacaaggacacaacggatgtg
tccacatacccaccagctggaaaacggctgacgatctacatgctcgagtcgtctccggta
catgaacaagtcaagatggcatatgattccatgttaccccttgttcagaaaatccaccca
aacctggctaataaaatcacctggatgcttgtggagagcgagaacaactatgaaatcatg
aatatgattggagatcctgagctcctgcgtgccagagtgaacaaaatggacgctgtcctg
aaggcgagggaagctggtctcaagccggaaaccatcaagatgctgttcaatgacaagaac
aagaaaagaaagatgaataagaggaagaattattaa
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