Neoarius graeffei (lesser salmon catfish): 132869645
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Entry
132869645 CDS
T10798
Name
(RefSeq) LOW QUALITY PROTEIN: scavenger receptor cysteine-rich type 1 protein M130-like
KO
K13912
deleted in malignant brain tumors 1 protein
Organism
ngra Neoarius graeffei (lesser salmon catfish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRCR
SRCR_2
Motif
Other DBs
NCBI-GeneID:
132869645
NCBI-ProteinID:
XP_060758920
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All DBs
Position
21:2299890..2367685
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AA seq
1625 aa
AA seq
DB search
MSSGQSVGPPPVPPSAVPGSVRLVNGGSRCAGRVEVLQDGQWGTVCGDDWDLDDAAVVCG
ELGCGEPVNATQNTYFGRGSGPIWMVDVSCRGSESTLKNCTSAGLGKRYCDHGEDAGVTC
SDGVRLVNGGSRCAGRVEVLQDGRWGRVCSSAWDVKDAAVVCRELRCGEPVDLXDWADFG
RGSGPIWIHDLYCRGSESTLNNCSSQEGHACGHVSDAGVICSDGVKLVNGGSRCAGRVEV
LQDGQWGTVCGVGWDLDDAAVVCGELGCGGPGDAPQNSDFGEGSGPIWLVGVQCRGSEST
LKNCRSDGRGDYCGHGRDAGVTCSGSVRLVNGGSRCAGRVEVLQDGQWGTVCHNDWDMRE
AAVVCRELRCGEPVNVRYFAHFGRGSGPIWMNAVKCRGSESTLKNCTSRELGKNNCNHGA
DAGVTCSDGVRLVNGGSRCAGRVEVLQDGQWGTVCGSAWDVKDAAVVCRELRCGEPVDLR
YWAEFGEGSGPIWIHDLYCRGSESTLNNCSSQGEHACEHGDDAGVVCSGKLLYLLSAGPH
RCSGRVEVFHGRSWSTVCDADFDQQDAEVVCRELGCGIPVEVLGSAAFGRGEGQVWTEEL
QCRGNESEIYFCPTSSSLKHSTCSHDNDVGLKCSAHTGTRLVNGPDSCSGRVELQYLSEW
GTVCAVSWDMRAADILCAQLDCGSAVAVVEVEWFGEGRDPIWADVFDCQGNETHLSQCGV
SSWSRAACSHQNDAGVICNGSSVALHEGRVRLSGGSECQGEVEIYFRQDWRRVLLDSWSL
SEASVLCRQLGCGSVLNYRSSPSTTEHKHMCVTGFSCSGTEAHLGNCSRAQNVNCSSGEQ
LYITCSGIFDSAHSSIRLVGSGGDCAGRLEVFHSGSWGTVCDDSWAIEDAQVVCRQLQCG
EALSTHIPAWFGPGTGSIWLNEVECEGNETSLWNCRFQRCEEGECGHQEDVGVVCSEFKE
IRLTEGCEGNLEVFYNGTWGNVCHNQMDDETVNMVCRELNCGRHGSLSNTAARVKSAPNW
LDHLKCRKHDSNLWQCPSSPWGQNRCDNDNEVVHITCTGGWIQTFLLLSIAINCSCSSFP
SQKHCSKRWSLRLRGDNGSCSGRLEVYHNATWGSICDDQWNIRNAQVVCRQLGCGSVLRA
ERNVPGSGEGTIWLNRVKCRGDEIHLWDCHHSLKNHTDCSHAGVTCADISTVSTATPTTT
SGLYICSSTIIATVQATQTPPSAGAPSSPPLVLFVLGTLLFLALVLLLLLFYQNRALRRG
VSKTRRKTLPEAVYEEINHRSITRRSRSSTQRGSLLSEEQHSGYEHVDDELLSVKSGIGE
KAEYYDDVIDTSDFKSDTGRVEPPEDYDDAITAGPIPDNVEEDEAENYDDAIPADQKSVL
LTEDVSENYDDEVTMETNPNIVTGDGPEDYDDVITEEQDGGETERKHIKISSDNAAGILR
GPTQMQGPGHVKGPEESCSLSLPSAAHTVLRVTCGGNNFRAHLDCALQAVFVLKAKGVEP
AGYGKRHSTLNEGVVESSQNVLADLKGLKLPQAVLSLLALSEDLHCVGGKSEFIIKGFAQ
VLVLLNHLHHLPMNVGDDGSIILDAALYLLQALYSMQALIGSQCRLFKDIGDVFTMLRSC
YIYGS
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaggtcaaagtgttggtcctccaccagttccaccctccgctgtaccaggcagt
gtgaggctggtgaatggtggaagtcgctgtgctgggagagtggaggttcttcaggatggt
cagtggggaacagtgtgtggtgatgactgggatctggacgatgctgcagtggtgtgtgga
gagctgggctgtggggagcctgtaaatgcaacacaaaacacttactttgggcgaggatcc
ggaccaatctggatggttgatgtgtcctgtagaggatcagagtcgacactgaagaactgt
acatcagcagggttggggaaacgttactgtgatcatggtgaagatgctggagtcacctgc
tcagatggtgtgaggttggtgaatggtggaagtcgctgtgctgggagagtggaggttctt
caggatggtcggtggggaagagtgtgtagttctgcctgggatgtgaaagatgctgcagtg
gtgtgtagagagctgcgctgtggggagcctgtagacctgtgagattgggctgattttgga
cgaggatcaggaccaatctggatacacgatttgtactgcagaggatcagagtcaacactg
aacaactgtagctcacaagagggacatgcctgtggtcatgttagtgatgctggagtcatc
tgttcagatggcgtgaagttggtgaatggtggaagtcgctgtgctgggagagtggaggtt
cttcaggatggtcagtggggaacagtgtgtggtgttggctgggatctggacgatgctgca
gtggtgtgtggagagctgggctgtggggggcctggagatgcaccacaaaacagtgacttt
ggagagggatcaggaccaatctggctggttggtgtgcagtgtagaggatcagagtcgaca
ctgaagaactgtagatcagatgggaggggggattactgtggtcacggtcgggatgctgga
gtcacctgttcaggcagtgtgaggctggtgaatggtggaagtcgctgtgctgggagagtg
gaggttcttcaggatggtcagtggggaacagtgtgtcataatgactgggatatgagagaa
gctgcagttgtgtgtagagagctgcgctgtggggagcctgtaaatgttcggtattttgct
cactttggacgaggatccggaccaatctggatgaatgctgtgaagtgtagaggatcagag
tcgacactgaagaactgtacatcaagagagttggggaaaaataactgtaatcatggtgca
gatgctggagtcacctgctcagacggtgtgaggttggtgaatggtggaagtcgctgtgct
ggaagagtggaggttcttcaggatggtcagtggggaacagtgtgtggttctgcttgggat
gtgaaagatgctgcagtggtgtgtagagagctgcgctgtggggagcctgtagatctgcgg
tattgggctgagtttggagaaggatcaggaccaatctggatacacgatttgtactgcaga
ggatcagagtcaacactgaacaactgtagctcacaaggggaacatgcctgtgaacatggt
gatgatgctggagtcgtctgttcaggtaaactgttgtacttactctctgctggtcctcac
cggtgctctgggagagtggaggtgtttcatggacgttcctggtccacagtgtgtgatgct
gactttgaccagcaggatgcagaggttgtgtgcagagagctgggctgtgggattcctgtg
gaggtgctgggatcagctgcttttggccgaggggagggtcaggtgtggacagaggagctt
cagtgtagaggaaacgaatctgagatttacttctgtccaacatcatcttcactcaaacac
tcaacctgctcccatgacaacgatgtgggattaaaatgttctgctcacacagggacgcgg
ctggtgaatggaccggactcctgttctggtcgagtggagcttcagtacctcagtgagtgg
ggcacagtttgtgctgtaagctgggatatgagagctgcagatattctctgtgcacagctg
gattgtgggagtgctgtggctgtggtggaggtcgaatggtttggggaggggcgtgacccc
atctgggctgatgtgtttgattgtcaggggaatgagacacacctctcacaatgtggcgtc
tcatcatggagtcgagctgcatgctctcatcaaaacgatgctggagtcatctgtaatgga
tcatccgtggcgcttcatgaggggcgagtgcggttgtctggagggagcgaatgtcagggg
gaggtggagatttatttcaggcaggactggaggagagttctcctggactcgtggagtctg
tctgaggcgtctgtgctctgcagacagctgggctgtggctccgtgctgaactaccgctcc
tctccatccaccactgaacacaaacacatgtgtgtaacgggtttcagctgctctgggact
gaagctcatctggggaactgcagcagagcacaaaatgtcaactgcagctccggggaacag
ctgtacatcacctgctcaggtatctttgactccgcccacagctccatcaggctggttggt
tctggtggagactgtgcaggaaggctggaggttttccacagcggctcgtgggggaccgtg
tgtgatgactcgtgggctattgaggatgcgcaggtggtgtgcagacagctgcagtgtgga
gaggccctcagtacccacataccagcctggtttggtcctggaactgggtccatatggctg
aatgaggtggagtgtgaggggaacgagacatccctgtggaactgcagatttcagcggtgt
gaagagggtgaatgtggacaccaggaggacgtaggagtcgtgtgctcagagtttaaagag
atccgactcacggagggctgtgaggggaatctggaagtgttctacaatggaacctggggt
aatgtgtgtcacaatcagatggatgatgagacagtaaacatggtgtgtcgagagctgaac
tgtggaagacatggcagtctgtcaaacactgcagcgagagtaaaatctgctccgaactgg
ctggatcatctgaagtgtaggaaacatgactctaatctgtggcagtgtccatcttcaccc
tggggacagaaccgctgtgataatgataatgaggtggttcatattacctgtacaggtggg
tggattcagacttttctgcttctgtccattgccataaactgcagttgctcttcatttccc
tctcagaaacattgctcaaagcgctggtctctcaggctgaggggagataatggaagctgc
tctgggaggttggaggtgtatcataacgctacgtggggctccatttgtgatgatcagtgg
aacatcaggaacgctcaggtggtgtgcagacagctgggctgtgggtcggtgctgagagct
gagaggaatgttcctggttctggtgaagggacgatctggctgaacagagtgaagtgtcga
ggggatgagattcacctgtgggactgtcatcattccctgaagaaccacactgactgctct
catgctggagtcacctgtgcagacatatccactgtgtccacggcgacacccaccaccaca
tcaggtctgtatatttgttccagtacaataattgctactgttcaagccactcaaactcct
ccatcagctggagctccatccagccctccactggttctctttgtgttgggaacgctgctc
ttcctggccttagtgcttctgctgctcctgttttaccagaacagagcgctcaggagaggt
gtctctaagacgaggcgtaagactctgcctgaggcagtctatgaggagatcaaccacaga
tccatcactagaagaagcaggagctccactcaaagaggaagtctcctctctgaagaacag
cattctgggtatgagcatgtggatgatgagcttctctcagtcaagtctgggattggagaa
aaggcggagtattatgatgatgtcatcgacaccagtgacttcaaaagtgatacaggaaga
gtcgagccaccagaggactacgatgatgccatcactgctggaccgatccctgataacgtg
gaggaggatgaagcagagaattatgatgacgccattccagctgatcagaagtcagtttta
ctgacagaggacgtgtccgagaactacgatgatgaggttaccatggaaacaaacccaaac
atcgtcacaggagacggtccagaagattatgatgatgtcatcactgaggaacaggatgga
ggagagacagaaaggaagcacatcaaaatcagctcagacaacgcagccggcatcctgagg
ggacccactcagatgcagggacctggacatgtgaagggtcctgaagaatcctgctcactg
agtttaccatctgctgctcacacagtgttgagagtgacctgtgggggcaataattttaga
gcacaccttgactgtgctctgcaggcagtttttgtactgaaggctaagggagtggaacca
gcaggttatggaaaacgacattctactctcaatgaaggagtggtagaaagtagtcagaat
gtccttgctgacctcaaaggacttaagcttcctcaggcggtactgtcactgttggcactt
tctgaggatctccactgtgttggaggcaaatctgagtttattatcaaaggttttgcccaa
gtacttgtactcctcaaccatctccaccaccttcccatgaatgttggtgatgatggcagc
attatactcgatgcagcattatacttgttgcaggcattatactcgatgcaggcattaatt
ggcagccagtgtcgcctcttcaaggacattggtgacgtcttcaccatgttgaggtcatgc
tacatctatggcagctga
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