Neoarius graeffei (lesser salmon catfish): 132870476
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Entry
132870476 CDS
T10798
Name
(RefSeq) transcription factor Sox-10-like
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ngra03000
]
132870476
Transcription factors [BR:
ngra03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
132870476
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
132870476
NCBI-ProteinID:
XP_060760099
LinkDB
All DBs
Position
22:206706..227796
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AA seq
468 aa
AA seq
DB search
MSAEEQSLSEVELSPGVSDDGGSVSPRRVGHTGDSQLVSGGGAEEEGAGLSHAGVSVKSD
DEDERFPIGIREAVSQVLNGYDWTLVPMPVRVNTGSKSKPHVKRPMNAFMVWAQAARRKL
ADQYPHLHNAELSKTLGKLWRLLNENDKRPFIEEAERLRKQHKKDYPEYKYQPRRRKNGK
PGSSTDSDAHSEGDVTHSQSHYKSLHLEAGHSAGAGSPLSDGHHTHPAGSNHSPPTPPTT
PKTELQGSKSGEGKREGGARGLGVGADGSSASSASAASSKPHLDFVNVDIGEISHEVMAN
MEPFDVNEFDQYLPPNGHHPSGSGSASCPAPSPSPYSYWLSKQQLSSEGGKPQIKSETHF
SGNADASVGGASTSGGGASAHVTYTPLSLPHYGSAFPSLASRAAPFAEYGDHQASGSYYT
HSGQSGLYSAFSYMSTAQRPIYTAITDPAPGNSPTHWEQPVYTTLTRP
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgaagaacagagtctgtcagaggtggagttgagtcccggagtgtcggatgat
ggcggctctgtgtccccgaggcgggtgggtcacacaggagactctcagctggtgtcagga
ggtggggcagaggaggaaggggcgggactgtctcacgcaggagtctcggtaaaatcagat
gacgaggacgagcgcttccccattggcatccgcgaggcggtcagtcaggttctgaatggg
tatgattggacgctcgtgcccatgccagtgcgcgtcaacacaggcagcaagagcaaacca
cacgtcaagaggcccatgaacgccttcatggtgtgggctcaggctgcgcgacgcaaactc
gcggaccagtaccctcatctacacaatgctgagctcagcaaaacactcggcaaactgtgg
agactcttgaatgagaatgataagcggccattcatcgaggaggcggagcgtctgaggaag
cagcataagaaagattatccggagtataaataccaacccaggagacggaagaacgggaag
ccgggatccagcactgacagcgacgcccactctgaaggtgatgtcactcacagccaatca
cactacaagagcctccacctcgaggcggggcacagtgctggggcagggtctcctctctct
gatggacaccacacacaccctgcaggttccaaccacagccccccaactcctcccactact
cccaaaacagagctccagggcagcaaatcaggtgaggggaagagagagggtggggccaga
gggctgggagtcggggcagatggaagctctgcctcttcagcttctgccgcttcctctaag
ccacacctggatttcgtgaacgtggacatcggcgagatcagccatgaagtgatggccaac
atggagccgtttgatgtcaatgagtttgaccaatacctgcctcctaatggacaccaccca
tcaggctcaggctctgcctcctgccccgccccgtctccttctccttactcctactggctg
tcaaaacagcagctgagctcagaaggtgggaaaccacagatcaagagcgagacgcatttc
tcgggtaatgctgacgcttcggtgggcggggcttccacatcaggaggtggagcatcagcg
catgtcacatacacacctctcagcctgcctcattatggctctgccttcccatctttggct
tccagggcggcaccctttgccgaatatggagatcatcaagcatctggatcatattacaca
cactctggccaatcggggctttactccgccttctcctacatgagcaccgcccagaggccc
atttacactgccatcactgaccccgcccctgggaatagccccacccactgggaacagcct
gtgtataccaccctgacccgaccgtaa
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