Neoarius graeffei (lesser salmon catfish): 132870795
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Entry
132870795 CDS
T10798
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03013
Nucleocytoplasmic transport
ngra03015
mRNA surveillance pathway
ngra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132870795 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
132870795 (ddx39b)
03015 mRNA surveillance pathway
132870795 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132870795 (ddx39b)
03041 Spliceosome [BR:
ngra03041
]
132870795 (ddx39b)
Enzymes [BR:
ngra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132870795 (ddx39b)
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132870795 (ddx39b)
Spliceosome [BR:
ngra03041
]
Complex C
Other components
EJC/TREX
132870795 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132870795 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
132870795
NCBI-ProteinID:
XP_060760653
LinkDB
All DBs
Position
22:24183309..24228176
Genome browser
AA seq
461 aa
AA seq
DB search
MPSAKTREQVKRNSRNKLLHRVNLKMTENDVDNELLDYEEDEVDATGGVGDGGLAGDGST
VALRKEGLKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC
QAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPAVKVAV
FFGGLPIKKDEETLKRESPHIVVGTPGRILALSRNKSLNLRHIKHFILDECDKMLEQLDM
RRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYV
KLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAMPQEERL
ARYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA
ITFVSDEGDARTLNDVQDRFEVNISELPEEIDISSYIEQTR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcagcaaagacgcgcgagcaggtgaagcgaaattcacgaaataaattgttgcac
agagtaaatctgaaaatgacggagaatgatgtggacaatgagctgttagactacgaggag
gatgaggtggatgcgacaggaggtgtcggggacggagggctcgctggagacggcagcact
gtggccttgaggaaagagggactcaaaggatcctacgtttccatccattcctcagggttc
agggacttcctgttaaagcctgagctccttcgagccatcgtggactgcggtttcgagcat
ccatctgaggttcagcatgagtgcattccacaagccatcttgggcatggatgtgttgtgc
caggccaagtccgggatggggaagacggctgtctttgtcttggcgacgctacagcagctg
gaaccagtgactggacaggtctcagtgctggtgatgtgtcatacccgagaactggcattc
cagatcagcaaagagtacgagcgtttctccaagtacatgcctgctgtcaaggtggctgtg
ttctttggcggtttgccgataaaaaaggatgaggagacgctgaagagggagagtcctcac
atagtggtgggaacgcccggccgcatcctggccctctcacgcaacaagagtctcaacctg
cgccacatcaaacacttcatcctggacgagtgtgacaagatgctggaacagcttgacatg
cgacgtgacgttcaggagattttccgcatgaccccacacgagaagcaggtcatgatgttc
agcgccaccttgagcaaagaaatccggcctgtctgccgaaagttcatgcaagatcccatg
gagatcttcgtggacgacgagaccaagctgaccctgcacggcctgcagcagtactacgtc
aagctgaaggacaacgagaagaacaggaaactgtttgatctgctggacgtgctggagttc
aaccaggtggtgatctttgtgaagtcagtgcagcgctgcatcgctctcgctcagctgctg
gtggagcagaacttccctgccatcgccatccacagagcaatgcctcaggaggagaggctc
gctcgatatcagcagtttaaagactttcagagacgcatcctcgtggccacgaacctgttt
ggcagaggaatggacatcgaaagagtcaacatcgcctttaactacgacatgcccgaggat
tcagacacgtacctgcacagggtggccagagcgggcaggtttggcacaaaaggtctagcc
atcacgttcgtctcagatgaaggcgatgcccgaacgctgaatgacgttcaggacaggttc
gaggtgaacatcagcgagcttccagaggagatcgacatctcgtcttacattgagcagacg
cggtaa
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integrated database retrieval system
