Neoarius graeffei (lesser salmon catfish): 132870906
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Entry
132870906 CDS
T10798
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132870906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132870906
03036 Chromosome and associated proteins [BR:
ngra03036
]
132870906
Enzymes [BR:
ngra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132870906
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
132870906
mRNA degradation factors
5'-3' decay
Decapping complex
132870906
Chromosome and associated proteins [BR:
ngra03036
]
Eukaryotic type
Gene silencing
piRNA pathway
132870906
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
132870906
NCBI-ProteinID:
XP_060760866
LinkDB
All DBs
Position
22:47718827..47827376
Genome browser
AA seq
482 aa
AA seq
DB search
MATAKMENVGAVAMGISKQNGQLRGLSSQSGPTVQSNPFARVATGGQKPAADSQEGSGIR
FGEDWKKSLQLPPKDNRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESI
PIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQALVMVPTRELALQVSQISIQL
SKHLGGVKVMATTGGTNLRDDIMRLDEIVHVVIATPGRILDLIKKGVAKVDKVQIMVMDE
ADKLLSQDFVVLIEDIISFLDKNRQILLYSATFPISVQKFMAKHLKKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITAEDRFNLKAIEDQLVTDIKPIPSNIDKSLYVAEFHSTNDEAEEQETPQ
DP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggctactgcgaagatggagaatgtaggcgctgtcgcaatggggatcagcaagcagaac
gggcagctcagggggctgagctcgcagtcgggacccaccgttcagagcaatccattcgca
agagttgctactggaggccaaaaacctgctgcagactctcaggaaggatctggaatcagg
tttggtgaagactggaaaaagagcctgcagcttccacccaaagacaatagagtgaaaact
tcagatgtgaccgccacgaaggggaacgagtttgaagactactgcttaaagagggagtta
ctcatggggatctttgaaatgggctgggagaaaccgtcccctgtccaggaggagagcatc
cccattgctctttctggtcgtgacatcctggctcgtgccaaaaatgggacaggaaagagt
ggagcgtacctgattcctatgctggagaggatcgacctgaaaaaagattatatccaggct
ttagtaatggtgcccactcgtgagcttgcactacaagtcagccagatcagcattcagctc
agtaagcatcttggtggagtcaaagtcatggccaccaccggtggaacaaacctccgagat
gacatcatgcgtctggatgagatcgtgcacgttgtcatagcgacaccaggcaggatactg
gacttgatcaagaagggtgtcgcgaaagtggataaagttcagattatggttatggatgag
gctgataagctgctctcccaggattttgtggtgctcattgaggatatcatcagcttcctg
gacaagaacagacagattttgttgtattccgccacctttcccatcagtgtgcagaaattc
atggcgaagcatctgaagaagccctatgagattaatctgatggaagagctgacgctcaag
ggcatcacgcagtactatgcctacgttactgagaggcagaaggtgcactgcctcaacaca
ctcttctccaggctgcaaatcaatcagtccatcatcttctgcaactcgactcagagagtg
gaactgctggccaagaaaattacccaactgggctactcctgtttctacatccatgccaag
atgatgcaggaataccgaaaccgtgttttccatgacttcagaaatgggttgtgcagaaac
ctggtctgtacagatttgttcacaagaggcatcgatatccaggcagtgaacgtggtcatc
aacttcgactttccgaagaatgcggagacgtatctgcatcgaatcgggcgctcagggagg
tttggccacctgggtctggccattaacttgatcacagcggaggatcgattcaacctgaaa
gccatcgaggaccagctggtgactgacatcaagcccatccccagcaacatcgataaaagt
ctgtacgtggcagagttccactcaaccaacgacgaggcagaggagcaggagacaccccaa
gacccctaa
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