Neoarius graeffei (lesser salmon catfish): 132870949
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Entry
132870949 CDS
T10798
Symbol
arid1ab
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132870949 (arid1ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ngra03000
]
132870949 (arid1ab)
03021 Transcription machinery [BR:
ngra03021
]
132870949 (arid1ab)
03036 Chromosome and associated proteins [BR:
ngra03036
]
132870949 (arid1ab)
Transcription factors [BR:
ngra03000
]
Eukaryotic type
Helix-turn-helix
ARID
132870949 (arid1ab)
Transcription machinery [BR:
ngra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
132870949 (arid1ab)
Chromosome and associated proteins [BR:
ngra03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
132870949 (arid1ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
132870949
NCBI-ProteinID:
XP_060760957
LinkDB
All DBs
Position
22:complement(54717733..54898104)
Genome browser
AA seq
2236 aa
AA seq
DB search
MAAQVAALSSTSPAAAAELKKPQEEEEEEEDSIPADTQQEKREQKELQDGTEVITNVRGG
GGGGGGGDPDMKNGNDNSSRMNNNNNQNDLDANSHPGIAHHHPAAFPPPPYGCSQHYTRG
PFHQHGGQQSPGMAPVLPGAVIEPYPGNSHDHGFSNHYNNYGPFPNRTQYQGQGFGMSSP
RTNTAGQPAKQPAAGTLMAGAFNNQRYNMSNPQPSPTPTLNQLLTSPSASRGYPGYPQGD
YSSPDGPGKGPGDMGSTNHYAAPWQQRGHHAPPMSPGNAPHALNRNQTPSPMDQVGKIRG
QHYGAANPYSQQQGPPPGAQQGPSYPGQGYGSPGPQRYPMGMQGRTPGAMGGMQYGQQMG
YGQQGPGAYGQSQGGYYGQQNPLAPHGGLQQGSYPQQHSSGPGSQHPYSQPPSGPPLSQG
GPSYSQQSQGQSSYPQPPHSQAGQPPYPQSQGTPQSAQGPQQQSGFPQAPPGSGQPLPPS
QQQQQQQQQGASQQQQQQQPSVGPPPQSQQPMGHGPPPQGHQPSPYSQTPPTQPQQQTPF
ERFPPPQQELSQDSFSSHASGPTSNQPMASSKSGTEDSMQGRPSSLPDLGSIDDLPTGTE
GALSPGVSTSGVSSSQGEQSNPAQSPFSPHTSPHVPGIRGPSPSPVGSPASATPSRTGPL
SPAGNQMPPRPSSVQSDGILHSSINQSAVAQDRVYMRNTQLPAYGSPQPASALSPRPSSG
GQVHAGMAHYPQNNSLGNYGPQGGQYVPQGYPRQQGYAGMPGANYPGGPGMGSPMNPMSG
QGGGSAYSGMPPGRMGPGQMGSRPYGPGMSPNMAGIPPQVASGMCPPPGMNRKPQDPTSA
GMHHGPSNSIHRPPGYPSMTQGMMGAGSPYVPPMNSMHGIMNQAGPYPMGGNVANNSAGM
APSPEFGMDKLNQNQKMNNKVDGTPKTESKKKSNSSTTTNEKITRLYELGAEPERKMWVD
RYLAFAEEKAMGMTNLPAVGRKPLDLFRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTS
SSAASSLKKQYIQCLYAFECKIERGEDPPPDIFNNDPKKNQAKVQPPSPAGSGSLQGPQT
PQSTSSSMTEGNDLKPPTPASTPHSQMPPMPGVRSSVNVQDPFADGGDPAFARRNSLTPN
SSFQPGMGGPDIMGRLGPYEPNKDPFGGMRKAGEQFMNPGQGPSSGMSEQYNRGPPGPIS
NMQLGHRQQYGPFGPGYDRRQEPGLSPDGSIGPGAPQTNALPSGADSGMYSPNPQQQRHD
SYVNQYPGQSAPPSGQYPNQQPGIYPQQANYTQKRPGDGGYCPPAKRHEGEMYSFTGQQQ
QGPQPSGGPQPQQDLYSQYNAYPGTDRRPPGPQGQFPFGFVRDRGPNAGGSNSQSSVPPQ
MMGSPLPSVPDGPQGPMWQGRNDLNYPNYPSRQGPPGVPAPGPGYHAMNRSEDMLPSDQR
MNHEGPWPGHVNQRQPPYGSGGSGPPMSRTLQSNFQSSQNHIPQVSSPAPMPRTMENSPS
PSKSPFMHTGIKNQKAVPLVPASHAAPPPVQPPVIRRDVAFPSGSVEATQPILKPRRRLM
MKDIGTPEAWRVMMSLKSGLLAESTWALDTISILLYDDNSISTFSLCQLPGFLELIVEYF
RRCLIEIFGILKEYEVGDPGQRTLIDPDAPDTDMSDEESLEVGQVDEEEDKEEQSSQHAS
QIQVKHENDELMHDQKSSEKSEEEKNGESSSSREHELSAPLQDSGAVQEKLKQGSKFDKL
PIKVVWKKDPFVIGRTSKLGRRQTFDSGLIHWSVGGGDTTEHIQTHFETKMELLKLHKRV
PVNTEVPPIADLVTENRNKDEKSIPHQQNEQQPESQTSSGQPLENENTTAVASASTTIMA
TVDDVLSGWSGAVPEESVRNDIENEEKNKFLFGIDPSQQINSIKILEDEPYSKDESPLCI
LSEWQDALARRCICVSNIVRSLSFIPGNDSEMSKHPGLLLILGRVVLLHHRHPERKEAPV
TYEKEEEEEGGVNCERGEWWWDCLEVLRENCLVTLANISGQLDLSMYPESICLPLLDGLL
HWAVCPSAEAIDPFPTLGLNGAVSPQRMVLETLSKLSIQDNNVDLILATPPFSRLEKFYS
SLVRLIGDRKVPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSIAATQFQ
QSQASLLHMQGPHFEPTSVDMMRRAARALHALAKVEENHSEFMLYESRLLDVSVSPLLNS
GVSHMICDVLFLIGQS
NT seq
6711 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgctgcgctgagcagcacgagccccgccgccgccgccgagctgaag
aagccgcaggaggaggaggaggaggaggaggactccataccggccgacacgcagcaggaa
aagcgcgagcagaaagagctccaggacggcaccgaggtgatcacgaatgtccgtggagga
ggaggaggaggaggaggtggagaccctgacatgaagaacggcaacgacaattcatcccgg
atgaacaataataacaaccagaacgatctagacgcgaacagtcacccgggcatcgctcat
caccacccggccgccttccctccaccgccgtacggctgcagccagcactacacccggggc
ccttttcatcaacatggcggacaacaaagccctggcatggcaccggtgctcccgggcgct
gtgatcgagccttacccgggcaactcgcacgaccacggcttctccaaccactacaacaac
tacgggccgttcccaaaccggactcagtaccagggccaggggttcggcatgagctccccg
cgcaccaacaccgccggccagccggccaagcagccggcagcaggaactctcatggcgggt
gcctttaacaaccagaggtataacatgagcaaccctcagcccagcccgaccccgacttta
aaccagctcctgacctcccccagcgcctcccggggctacccgggctacccgcagggcgac
tacagcagcccggacgggccggggaaagggcccggggacatgggcagcaccaatcactac
gcagcgccatggcaacaaagaggccatcacgcgccccccatgagcccggggaacgccccg
cacgcgctcaacaggaaccagaccccaagcccaatggaccaggtggggaagatcaggggc
cagcattatggagcagcaaacccttactctcagcagcaggggcctccaccgggggcccag
caagggccctcctaccctgggcaaggctacggttccccagggccacagagatacccaatg
ggcatgcaagggcggactcctggtgctatgggaggcatgcagtacgggcagcagatgggt
tatggacagcaaggcccaggagcttatggccagagccaaggaggctactacggtcagcag
aaccctcttgctccccatggaggccttcagcagggttcgtaccctcagcagcattccagt
ggcccaggctcccagcatccgtactcccaacctccatcaggtcctcctctgtctcagggt
gggccttcttactcccagcagtcccagggccaatcttcatacccccaacctccacattcc
caggctggccagccaccttatcctcagtcccagggtacacctcagtcagctcagggccct
cagcagcagtccggattcccccaagcaccgcctggttctgggcagcctcttcctccatct
cagcagcagcagcagcagcagcagcaaggtgcatctcagcagcagcagcagcagcagccc
agtgtagggcctcctccgcagtcccagcagccaatgggtcacggtcctcctccacagggg
caccagccctcaccctattcacaaactccgccaacgcagcctcagcagcagacgcccttc
gagcgcttcccacctccgcagcaggagctgtcccaagactccttcagttcccatgcttcc
ggtcctacctcgaaccagcccatggcctccagtaagagtggtacagaggacagcatgcaa
ggccgtccttcaagtctgccggacctgggctcgatcgatgacctgcccacaggcacggag
ggtgcgctgagtccaggggtcagcacatctggtgtctccagcagtcagggcgagcagagc
aacccggctcagtcgccgttctccccgcacacctcgcctcacgtgccgggcatccgtggg
ccttccccatcacctgtgggctcgcccgccagtgccacgccttctcgcactggacccctg
tcacctgcaggaaatcagatgcctcccagaccttccagtgttcagtcagatggaattttg
cattcttccataaaccagtctgctgtggctcaggacagagtctacatgcggaacacacag
ttgcctgcctacggctcacctcagcctgcttctgccttatcgccacgaccgtcatctgga
ggccaagtgcatgctgggatggctcattatcctcagaacaactctctgggcaattacggg
ccacagggcgggcagtacgttcctcagggctacccgaggcagcaaggctatgctggcatg
cctggtgctaactatcctggtggtccaggcatgggcagcccgatgaatcccatgtcaggg
cagggaggaggcagtgcatatagtggtatgcctcctgggcgcatgggtccaggacagatg
ggctcaaggccgtatggtcctggaatgagtcccaacatggctggtataccacctcaagtg
gcttcagggatgtgccctccacctggcatgaacagaaaaccccaagatccaacctcagca
gggatgcaccatggtccatctaactccatacacaggcctcctggttatcccagtatgacc
caggggatgatgggagctggttctccgtatgtgccgcctatgaacagcatgcatgggata
atgaaccaggcagggccgtaccccatgggtggtaacgtggccaacaactctgcaggtatg
gctcccagcccagagtttggcatggataaacttaaccaaaaccagaagatgaataataaa
gttgatgggactcctaaaacagaatcgaaaaagaagtcaaattcgtccaccacaacaaat
gagaaaataactcggctatatgagttgggtgccgagccagagaggaagatgtgggtggac
cgttacctggcctttgctgaggagaaagccatgggcatgaccaacctcccggcggtgggc
cgtaagcctctcgacctctttcgtctctatgtgtcagttaaagagattgggggccttaca
caggtgaataagaataaaaagtggagggagttggcgacaaacctgaatgttgggacctcc
agtagtgcagctagttcactaaagaagcaatacattcagtgtctgtatgccttcgagtgc
aagattgagcgtggtgaggacccacctcctgatattttcaacaatgaccccaaaaagaac
caggcgaaggtacagccaccctctccagcgggctctggatcattacagggcccccagact
ccacagtcaactagtagctccatgactgaaggaaatgatctgaagccccctacccctgca
tcaacaccccacagccagatgccccctatgcctggtgtgcggagcagtgtgaacgttcaa
gacccctttgctgatggaggagaccctgcctttgctagacggaactcactgacgcctaac
tctagcttccagcccgggatggggggcccagatataatgggtcgtttaggtccttatgag
ccaaataaggacccttttggtggtatgaggaaagcaggtgagcagttcatgaatccggga
caaggccccagcagtggaatgagtgaacaatataaccgaggccctccaggacctatcagt
aacatgcagttaggtcacagacaacagtacggaccttttggaccaggatatgaccgaaga
caagagccaggtctgagtccagatggcagtataggtcctggagccccacaaacgaacgcc
ttgccgtctggtgcggactcggggatgtattcacctaatccgcagcagcaaaggcatgat
tcctatgttaatcagtaccctggccaaagtgcaccacctagtggacaatacccaaatcag
cagcctggaatctacccacagcaggcgaattacacacagaagaggcctggagatggaggt
tattgtcctccagcaaagcgtcatgagggggaaatgtattcattcactggccagcagcaa
caaggccctcagccctcaggtggacctcaaccccagcaggacctgtacagccagtataat
gcctaccctggtacagaccgacgtccacctggtccacagggtcagttcccgtttggtttt
gtacgggacagggggcctaatgccggaggctctaactctcagtcctccgtgccaccacag
atgatgggcagccctttgccatctgtccctgatgggcctcaaggtcccatgtggcaaggc
agaaatgacctaaactatcccaactatcccagtcgtcagggacctcccggagttcccgct
ccgggtccagggtaccatgccatgaaccgttctgaagacatgttgccttcagaccagcga
atgaatcatgaaggtccatggcctggtcatgtcaaccagagacagcctccttatggatct
ggtggttctggcccacccatgtctagaacactacaatccaattttcagtcctctcagaat
cacattccacaggtatcaagtccagcacccatgccaagaaccatggagaacagtccatca
cccagcaagtccccttttatgcacactgggataaaaaatcagaaagctgtacctctagtc
ccagcctcacacgcagctcccccgccagtacagcctcccgtgatcaggagagatgtggcc
tttccttcaggatctgtagaggcgacgcagcccatcctcaaaccacgccgccgactcatg
atgaaagatattggaacgccggaagcctggagagtcatgatgtctctcaaatcaggattg
ctggcagagagcacttgggccttggacaccatcagtattcttctatatgacgataatagc
atttctaccttcagtctgtgtcagcttcctggcttccttgaactgatagttgagtacttc
cgaagatgcctcattgaaatttttggcatcttgaaagaatacgaggttggagatcctggg
cagcggacactgattgacccagatgctcccgacactgatatgtctgatgaagaaagcctg
gaagtagggcaggtggatgaagaagaggataaagaggagcagagcagtcaacacgcatca
cagatccaagtcaagcatgagaatgatgagcttatgcatgaccagaaatccagtgaaaag
tctgaagaagagaagaatggagaaagctcttcatctagagagcatgagttatctgctccc
ttacaagacagtggtgcagtacaggaaaagcttaaacagggtagcaaatttgacaagctt
cccattaaggtagtgtggaagaaagacccatttgtcattggtcgcaccagcaagttgggc
cggagacagacttttgacagtgggctgattcattggagtgttggtggaggtgacaccacg
gagcacatccaaactcactttgagaccaagatggagctgctaaaacttcacaaacgggtg
cctgtcaatactgaggtacctcccatagcagacctggtcactgagaacagaaataaggat
gaaaagagcataccacaccagcaaaatgagcagcaaccagagtctcagacttcctcaggc
caaccattggagaatgagaacaccacagctgttgccagtgcatctactaccattatggcc
actgttgacgacgtgctctctggctggtcgggagcagtgcctgaagaatctgtgcggaat
gacattgagaacgaggagaagaacaagttcctgtttggtattgacccttcacagcaaatc
aacagcattaaaatccttgaggatgagccatacagcaaggatgagtccccattgtgcata
ttgtcagaatggcaggacgcgttagcccgccgctgcatatgcgtctctaacatcgtccgg
agtctatcctttatccccggcaatgacagtgaaatgtccaaacacccaggcctgctgcta
atactgggccgtgtggtgctcctgcaccaccggcatcctgagcgcaaggaggctcctgtc
acctatgagaaagaggaagaggaggaaggaggagtcaattgtgagcgaggtgaatggtgg
tgggactgtctggaggttctgcgagaaaactgtctggtcacgttggccaacatatcaggc
cagttggacctgtccatgtaccccgagagtatctgcctaccactgctggatggtcttctc
cactgggctgtctgcccctcagcagaagccattgatcccttcccaacactggggcttaat
ggtgctgtttcccctcagagaatggttcttgagacccttagcaagctcagcatccaggac
aataatgttgacctcattctagccacgccacccttcagtcgcctggagaaattctatagt
tcactggtacgcttaattggtgaccgtaaggtacccgtgtgccgggagatggcagtggtg
ctgttagccaacctggcccagggtgacagcctggcagctcgggccattgctgtgcagaaa
ggcagtatagggaacctcctggggtttctggaggacagtatagcagccacacagttccag
cagagtcaagcttcactgctgcatatgcagggaccacactttgaacccactagcgtggac
atgatgcggcgggctgcccgcgccctgcatgccctcgccaaagtagaggagaaccactcc
gagtttatgttgtatgagtcacggctactggacgtctctgtatcccccctcctgaactca
ggagtgtcccacatgatctgtgatgtactgtttctgattggccagtcatga
DBGET
integrated database retrieval system
