Neoarius graeffei (lesser salmon catfish): 132871116
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Entry
132871116 CDS
T10798
Symbol
shhb
Name
(RefSeq) tiggy-winkle hedgehog protein
KO
K11988
sonic hedgehog
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
132871116 (shhb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ngra01002
]
132871116 (shhb)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ngra00536
]
132871116 (shhb)
Peptidases and inhibitors [BR:
ngra01002
]
Cysteine peptidases
Family C46: hedgehog family
132871116 (shhb)
Glycosaminoglycan binding proteins [BR:
ngra00536
]
Heparan sulfate / Heparin
Morphogens
132871116 (shhb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Vint
Hom_end_hint
Motif
Other DBs
NCBI-GeneID:
132871116
NCBI-ProteinID:
XP_060761204
LinkDB
All DBs
Position
23:1975371..1983407
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AA seq
419 aa
AA seq
DB search
MDLTLLLRKLALVSCVCVLLAGCARACGPGRGYGMRRHRHRRLTPLAYKQFIPNVAEKTL
GASGKYEGKITRNSERFKELIPNYNPDIIFKDEENTNADRLMTQRCKDKLNVLAISVMNQ
WPGVKLRVTEAWDEDGNHFEESLHYEGRAVDITTSDRDKSKYGMLSRLAVEAGFDWVYYE
SKAHIHCSVKAENSIAVKSGGCFPASASVYLSDGSTKHVEDLKEGDKVLAADELGNIVYS
DFIAFLDRDVNMHRTFVVLETSERNVTLRLTAAHLVFVRDNSAALGMAAKFASRVKPGQE
VFVWEGQGRLRSARVERVYAVEDRGSYAPLTSHGTIVVDGVLASCYAAVEEHRWVHWAFA
PLRLSHALTATSWWRWSVPDSIATSQQDGIHWYPKMLLHVGTWLLDRDSFHPLGISSLS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggacctgacgctgctgctccggaagctggcgctcgtctcgtgcgtgtgcgtgctgctg
gccggttgcgcgcgcgcctgcggtccgggccggggctacggcatgcgcagacaccgacac
cggagactgacgccgctcgcctacaagcagttcatccccaacgtggcggagaaaacgctg
ggcgccagcgggaagtacgagggcaagatcacgcgcaactcggagcgcttcaaggagctc
atccccaactacaaccccgacatcatcttcaaggacgaggagaacaccaacgcggaccgc
ctcatgacccagcgatgtaaagacaagctgaacgtgttggccatctcggtgatgaaccag
tggcccggagtgaagctacgtgtgacggaggcctgggacgaggacggcaaccattttgaa
gagtctttacactacgagggccgagcggtggacatcacgacctcggacagagacaagagc
aagtacgggatgctgtcgagactcgctgtggaggccggattcgactgggtttattacgaa
tccaaagcgcacatccactgctccgtcaaagcagagaattccatcgctgttaaatctggc
ggctgttttcctgcatctgcgtcggtttacctctcagacggaagcacgaagcacgtggag
gatctgaaggaaggtgataaggttctcgcagcagatgagctaggaaacatcgtgtacagc
gacttcattgccttcctggaccgagacgtgaacatgcaccgaacattcgttgtactcgag
acgtcggagcgtaacgtgactctgaggctcacagcggcgcacctggtcttcgtccgagac
aactcggctgccttggggatggcggcgaagtttgcgagcagagtgaaaccaggacaggag
gtgtttgtgtgggaagggcaaggacgtctgaggagtgcacgtgtagagcgtgtttacgcc
gtggaggacaggggctcgtatgcgccactcacctcacacgggaccatcgtggtggacggc
gtgttggcttcatgctacgctgctgttgaggagcaccgctgggtgcactgggcttttgcg
cctctccgcctgagtcacgcactcacggcgacctcatggtggcgctggagtgtaccagat
tcaatcgctacttcgcagcaggatgggattcactggtatcccaagatgctgctgcacgtt
ggaacgtggctgctggaccgggactctttccacccgctcgggatttcaagcttgagctga
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