Neoarius graeffei (lesser salmon catfish): 132871330
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Entry
132871330 CDS
T10798
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04382
Cornified envelope formation
ngra04510
Focal adhesion
ngra04512
ECM-receptor interaction
ngra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132871330
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132871330
09142 Cell motility
04820 Cytoskeleton in muscle cells
132871330
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132871330
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ngra04147
]
132871330
00536 Glycosaminoglycan binding proteins [BR:
ngra00536
]
132871330
Exosome [BR:
ngra04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132871330
Glycosaminoglycan binding proteins [BR:
ngra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132871330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132871330
NCBI-ProteinID:
XP_060761424
LinkDB
All DBs
Position
23:56101738..56144766
Genome browser
AA seq
1560 aa
AA seq
DB search
MEFTSEVGAGNNFIIKLAAQQVGKLRWIVLVHLTERHTDAGKVLEPCNGRNCSTCTCQPA
KGARGAPGQLGEQGIQGEYGPHGPPGPQGEKGRRGEEGEAGPDGPPGDRGMTGLPGFPGA
NGVDGHVGDGGLPGPPGSCGAKGSPGGKGVPGTHGLDGIPGRHGPKGQKGVKGEPSFINI
YQGDAGKPGPPGPPCPFVIPGPEYLPKGEKGPTTGPGMKGEKGIIGFPGLRGLPGKDGPA
GLPGLQGPNGDPGPPGHRGHPGLKGEMGDPGLKGPLTVLNTERGPPGEPGPCGPPGLPGD
YGLMGEPGFPGHPGETFPGPPGHPGLPGSEGPKGFKGDSGLLIEFEPGPPGLPGLPGIKG
VRGQPGPTVKLDKCCPPYPESPEEKGDRGLPGVKGAKGQKGYPGDNYCTSSGEQPPGPPG
PPGLPGYDGVPGSTGERGDPGSPGDPGLPGAIGRRGPCGPQGYKGQKGDTYFSAVKGIKG
DRGDPGLPGQPGENGQEGISGPQGSVGDPGPPGNGYQGPKGYKGLPGAIGPKGDPGPRGP
QGQGIQGPRGLPGEPGNQGIDGLPGFPGPPGSPGPSCCPDNPGPPGPKGDTGAPGLPGAP
GDAGPDGIPGPKGEQGDDVFGGFGPQGFPGLPGDPGDQGPTGSSYAGTPGSPGPQGPPGL
KGCQGDNLSGNPGLPGLVGLPGSPGPKGTRGLLGPPGVTGENGLPGHQGCKGQVGDDGDP
GPPGIPGTVPNFCAALPGPPGPPGPEGLPGLPGLYIHAGIKGEKGLIGIPGYGPNGPSGS
PGLPGPPGSPGPNGSKGTDGEPGLPGLPGIKGMNGEPGLAGAKGFPGKPGLPGPPGRKGE
SGDQGPTGLTGSKGSKGSKGVKGAPGTPGNFTMLKGKRGLPGLNGESGFPGPRGKRGQSG
LPGKPGLDGLDGAPGFQKGLPGLPGRLGLQGPPGPQGLKGYPGDGGFPGCTGEQGDIGFP
GLNGPPGYQGLPGNKGDKGDSTGCPGPAGPKGSKGESVCVAEFGDPGDPGKLGHQGPQGQ
PGHPGPSGPPGPDGYQGNRGPPGLSGPLGPPGIPGFLGPKGHLGLPGQKGIQGPPGLDGL
DGLPGPKGENGWCGNDDVGLPGLQGDPGDQGPPGDPGIPGDIGLGPKGQIGCPGHQGPPG
NPGLPGVPGPPGPPGLAVSGDPGDEGPSGLPGQDGVRGSVGSPGDTGFPGPPGVKGQKGL
PGLIGLPGSIGLKGTDGPPGLKGEKGITGARGPQGRNCTVVPPTLNPPQCGPPGQPGVPG
PPGYQGVNGHPGNPGAIGSKGQTGPYGLPGKPGTPGLPGPPGDAGDHGQDGFVGPQGPPG
LPGEPGFPGPVDPVDSGFLLVIHSQSEVVPQCPAGMPLLWSGYSLLYLEGQEKAYTQDLG
RAGSCLRVFSTMPFSYCNSAACHYASRNDKSYWLSTNNPLPMMPISCGEIYQYVSRCVVC
EAPSPAVAVHSQNTSVPSCPIGWRSLWIGYSFLMHTGSGDEGGGQSLTSSGSCLKDFRTQ
PFVECQGPRGTCHFFANVYSFWLTGVSHEQEHGLAPKTRTLKTMSQQRAWISRCHVCMKQ
NT seq
4683 nt
NT seq
+upstream
nt +downstream
nt
atggaatttacttcagaagttggtgctgggaataactttataatcaagttggctgcacaa
caagttggaaaactgaggtggatcgtactggtgcatcttactgaacggcacactgatgca
ggtaaagtgttggagccatgtaatggcaggaactgctctacgtgcacatgccaacctgcc
aaaggtgcccggggggcaccagggcaactgggtgaacaggggattcagggtgagtatggc
ccacacggcccaccgggaccacaaggtgagaagggcagacgaggggaggagggggaagca
gggcctgatggacctccaggggacagggggatgactggtctcccaggctttcctggagca
aatggtgtggatggccatgttggtgatggaggtcttccaggtccaccaggatcatgtggc
gctaaagggtctccagggggaaaaggtgtccctgggacacatgggttggatggaatacct
ggacgacatggacctaaaggacagaaaggtgtgaagggggagccgagcttcatcaatata
tatcagggggacgctggaaaacctggtccacctggtccaccatgtccttttgttatacct
ggacctgaatatcttcctaaaggagaaaagggacccacaacaggccctggcatgaaaggg
gaaaaaggaattattggatttcctggtttacgaggtctcccaggtaaagatggaccagca
ggacttccaggtctacagggacccaatggagacccaggtccacctggtcaccgaggtcac
cctggtctgaagggtgaaatgggagatccaggtttgaaaggtcctctaactgttctcaac
actgagcgagggccacctggtgaaccagggccatgtggaccacctgggctacctggggat
tatggattaatgggagaaccaggatttcctggtcatccaggagaaactttccccggacca
cctggacatcctggactgccaggttctgaaggacccaaagggttcaaaggagactcaggt
ctgcttattgagtttgaacctggacctcctgggttacctgggcttcctgggatcaaagga
gtccgaggtcaacctggtccaactgttaaattagataagtgttgccctccttatccagaa
tcacctgaggaaaaaggggacagaggattgcccggggtaaaaggtgctaaagggcaaaaa
ggttatcctggggataattattgcacttcaagtggggaacagccaccaggtcctcctggt
cctcctggactcccaggatatgatggtgttcctggaagtacaggagaaagaggtgatcct
ggatccccaggagatccaggtctgcctggtgctattggacgccgaggcccatgtggtccc
caaggttacaaaggtcagaaaggagacacttatttttcagcagtaaaaggtataaaagga
gataggggtgatcccgggctccctggtcaaccaggagaaaatggccaggaaggtatttca
ggaccacaaggttcggttggagacccaggaccaccaggaaatggatatcaaggtccaaaa
ggatacaaaggtttaccaggagccatagggcctaaaggtgacccagggcctcgaggtcct
caaggccaaggtattcaaggtccaagggggctgccaggagaaccaggaaaccaaggcatt
gatggtctgcctggatttcctggacctccaggttctcctgggccttcatgttgtcctgat
aaccctggacctccaggaccaaagggtgacactggagctcccgggctaccaggagcacct
ggggatgctggtcctgatggaatcccaggcccaaaaggagaacaaggagatgatgtcttt
ggaggatttgggcctcaaggttttccaggattacctggtgatccaggtgatcaaggtccc
actggaagtagctatgctggcacaccaggctcacctgggccacaaggaccaccagggctc
aaggggtgtcaaggtgataatttatctggtaatcctggacttcctggactagttggatta
cctggaagcccaggtccaaagggtactcgtggtctgttgggtcctcctggagtaacagga
gaaaatgggctccctggtcatcaaggatgtaaagggcaggttggggatgatggggaccca
ggtccacctggaataccagggactgtacctaatttttgtgctgctctcccaggtccgcca
ggtcccccaggacctgagggtctgcctggattgccaggattgtatattcatgcaggtata
aagggagaaaaaggactgattggtattccaggatatggcccaaatggtccttcaggctca
cctggcctacctggcccccctggttcccctgggccaaatggttcaaaaggaacagatggt
gaaccaggactacctgggcttcctgggataaaaggaatgaatggggaacctggtttagct
ggagcaaaaggattccctgggaagccaggtttaccggggcctccaggcaggaaaggagag
agtggtgatcaggggccaactggtttgactggatccaaaggatccaaaggatccaaaggt
gttaagggagctccagggactccaggcaatttcaccatgctgaaaggcaaaaggggctta
cctggactcaatggtgaatcaggattcccaggacctagaggtaaaaggggtcaatctggg
ttgcctggaaaaccgggtctggatggattagatggtgcccccggatttcagaaaggtttg
cctggcttgcctggaagacttggcctgcaggggccaccaggcccacaagggctcaaagga
tatccaggtgatgggggattcccaggatgcactggagagcagggtgatataggttttcct
ggattaaatggtcccccaggctaccaagggctgccaggcaacaaaggtgacaaaggggac
agtactggatgtcctggtcctgctggaccaaaggggagtaagggtgaaagtgtatgcgta
gctgaatttggagatccaggagacccagggaagctaggacatcaaggtccacagggacag
cctggtcatcctggtccctctgggccaccaggtcctgatggatatcaaggaaatagaggt
cctccagggctttctggtcctttgggtcctccaggcattccagggtttcttggacctaaa
gggcatctaggtctaccaggtcagaaaggaattcaaggaccaccaggtcttgatggccta
gatggactccctggtccaaaaggagagaacggctggtgtggtaatgatgatgttggcctt
cctgggttacaaggtgatccaggagaccaaggcccacctggtgacccaggaatcccagga
gacattgggcttgggcccaaaggacagattggatgtcctggacaccaaggtccccctggt
aatccaggtctacctggtgtcccaggtccgcctggtcctccaggtttagctgtttctgga
gatcctggagatgaaggaccatcaggactaccagggcaagatggtgtaagaggttcagtt
ggatccccaggagatactggctttcctggaccaccaggagtcaaagggcagaaaggactt
cctggtttaataggtttacctggatcaataggtttgaaaggaactgatggaccaccaggg
ttgaaaggtgaaaaagggatcacaggggccaggggtccccaaggtcgtaattgtacagtg
gtaccacccactctgaacccccctcagtgtgggccaccaggacaacctggggtgccagga
cctccaggataccaaggagtaaatggacaccctggaaatccaggagcaattggttccaag
ggtcagacaggcccttatgggttacctgggaaaccaggaactccaggacttccaggccca
cctggagatgctggagatcatggacaagatggttttgtggggccacaaggcccaccaggg
ctcccaggtgagccaggtttcccagggccagtggatccagtggactctggctttctcctg
gttatccacagtcagtcagaggtggtgccgcagtgtccagcaggcatgcctttactctgg
agtggttatagtcttctttatttggaaggccaggagaaagcttacacacaagacctgggc
cgagctggctcctgtctgcgtgttttcagcaccatgcccttctcctactgtaactctgcc
gcctgtcactacgccagtcgcaatgacaaatcctactggttgagcaccaacaaccctttg
cctatgatgcccatatcatgcggggagatctaccaatacgtcagccgctgtgtggtgtgt
gaagctccaagtccagccgtagcagtccacagccagaacaccagtgtgcccagctgtcca
atcggctggagaagtctatggattggctactcattcctcatgcacactggctcaggtgat
gaaggtggtggtcagtctctcacctcatcaggaagctgtttgaaggacttcaggactcag
ccgtttgtggagtgccagggtccacgtgggacttgccatttctttgccaacgtctacagc
ttctggctgaccggcgtgagccatgagcaggagcatggcttagcaccaaaaactcgcact
ctcaagaccatgtcgcagcagcgagcgtggatcagccgctgccatgtttgcatgaagcag
tga
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