Neoarius graeffei (lesser salmon catfish): 132871616
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Entry
132871616 CDS
T10798
Symbol
vcpip1
Name
(RefSeq) deubiquitinating protein VCPIP1 isoform X1
KO
K11861
deubiquitinating protein VCIP135 [EC:
3.4.19.12
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ngra01002
]
132871616 (vcpip1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ngra04121
]
132871616 (vcpip1)
Enzymes [BR:
ngra01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
132871616 (vcpip1)
Peptidases and inhibitors [BR:
ngra01002
]
Cysteine peptidases
Family C64
132871616 (vcpip1)
Ubiquitin system [BR:
ngra04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
OTU
132871616 (vcpip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VCIP135_N
OTU
OTU1_UBXL
ubiquitin
ULD_2
Motif
Other DBs
NCBI-GeneID:
132871616
NCBI-ProteinID:
XP_060761914
LinkDB
All DBs
Position
23:complement(21831389..21876184)
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AA seq
1110 aa
AA seq
DB search
MSSAQGTKKRDKRIFSGICPDFKCQARLFFPAYSSVSIECTECGQRHEQKDLLNVKEVTD
PDVVLHNLLRNALLDVTGAPKKSTELVKVMGLSNYHCKLLSPILTRYGMDKQTGKAKLLR
EINQGELFDCSLLGSRAFLIEQEHVSTVGYGKDRSGSLIYLHDTLEEIKKANNNKECLIP
VHVDGDGHCLVHAVSRALVGRELFWHALRENLKLSFKQNLDRYKALFQDFIDTAEWEDII
NECDPLFVPPEGVPLGLRNIHIFGLANVLHRPIILLDSLSGMRSSGDYSATFLPGLVPEE
QCRGKDGSLNKPICIAWSSSGRNHYLPLVGIKGMPLPKLPAALIPKAWGVPQELICRYVS
LEACGGCVIGGDRSLQEKYLLRLVSAMEDVFIEKHGIHPALVADVHQYVYRRTGVIGIQP
EEVTEAAKKLVQENRLHRCLICNALSELHVPTEWLVPGGKLYNLAKSTHGTLRGDKNYTF
PLNNVVCSYCPQRDALVPDYKLSSLSTCTWCHRNSARRVRGDGSIVYLNGDRTNTHSQGG
KCGCGFKHYWDGKEYDNLPEAFPITLEWGGRVVRETVYWFQYELDAALNSNVYNVAMCLV
TKHFPGEFGSEILVQKVVNTVLHHTAKKNPGEYQPVTIEGAHMQGQGGGQVVEWDANPPQ
KIILTGQKGRTLHKEELVMSQAERSLQHKISEQAALSQRRRTQRQQMQDQSAEPRSASPA
PFSSAPPTPTKGLTAIGQKKIRVTTSDGRQATLQLQAHNTYADLQEAITQAFNLQPHQQC
IRHGFPPRELPPPPPEHQDLPVALQHGDRITVEVLKESVPDTQINTPTLMEPWLSRTSSR
EIQDNVDLEMSSLCLLATLMGEDVWSYAKKLPHLFQQGGVFYNIVKKDMGLLDGKHCTLP
HLTGKTFVFNAAEERLELCVDTAGHFPVGPNVEEIIQDALSQLCSEAPSRNREGSPAHGL
KLGSGGVVRKKEQTITAFQGKGHSLGSTSHDHQPLSQEHSNGVDLSGSVQGEGLAQSREE
LVRVAPGVLTLREGCREVELEPTAIEAQRRRLQEMVSNIQASMDKHLRQQMTSSTITKQD
EKEKDLDEQDEIKSQGPDSPSISEPMDQSL
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggcacaaggtacaaagaaaagggacaagcgaattttttcaggtatctgtcca
gatttcaaatgccaggcgagactgttcttccctgcttatagctcagttagcattgaatgc
acggagtgcggccaacgtcacgaacagaaggatcttttaaatgtgaaagaagtaaccgat
ccagatgtagtgcttcataatttactcagaaatgccttgctcgatgttacaggagctcca
aagaaaagcacagagctggtcaaagtgatgggtctgtccaactaccattgcaagctactg
tcaccgattcttacccgttacgggatggataaacagacggggaaagcgaagctactacgg
gaaataaatcaaggtgagctctttgactgctcgctgctaggtagcagagcttttcttata
gaacaggagcacgtatctacagttggctatggtaaagacagatctggcagcctcatatac
ctccatgatacattggaggagatcaagaaagctaacaacaacaaagaatgtctcattcct
gtacatgtagacggagatggccattgccttgttcacgctgtgtccagggctttagtgggt
cgtgagcttttttggcatgcgctaagagagaacctcaagctcagtttcaaacaaaatctg
gatcgctataaggctctctttcaagactttattgacactgcagaatgggaggacatcatc
aacgagtgtgaccctttgttcgtgcctccagaaggtgtcccacttggattgaggaacata
catatttttgggctagccaatgtcctgcaccgtcccataatcctgctggactctctgagt
ggcatgaggagctcgggtgactactcggccacatttctgccaggtttggtgcctgaggag
caatgcagaggaaaggatggctccctcaacaagcctatctgcattgcttggagcagctct
ggcaggaatcattatctccctctagtgggtattaagggaatgccacttccaaaactgcct
gcagcactgatccccaaggcttggggagttccacaggagcttatctgtaggtatgtcagt
ctggaagcctgtggaggctgtgtcattgggggagatcgaagcctgcaagaaaaatacttg
ctccgtttagtcagtgccatggaggatgtttttatagagaaacatggcatccatcctgca
cttgtggctgatgttcatcaatatgtttaccgccgaacaggggtaattggcatccaacct
gaagaggtgaccgaggcagcaaaaaaattggtgcaggagaatcgtctgcaccgctgtctg
atctgcaatgcactgtctgaactccatgttcccactgagtggctagtacctggtggaaaa
ctttacaaccttgctaagtctactcatggcactctccggggagataagaactacaccttc
ccattgaataatgtggtatgttcctactgccctcagagggatgcactggttcctgactac
aaactcagttcactgtccacctgcacctggtgccacaggaactctgcacggcgtgtccgt
ggtgatggatctatagtgtacttgaatggggaccgtaccaacacacattcacagggtggt
aagtgtggttgtggctttaagcattactgggatggaaaggaatatgacaacttgccagag
gcattccccattacccttgagtggggtggccgtgtagtccgtgagactgtctattggttc
cagtatgaattagatgcagcgctgaacagcaatgtctacaatgtggcaatgtgtctggtc
actaagcacttcccaggagagtttggcagtgagattctagtgcagaaggtggtgaacact
gttctgcaccatacagcaaagaagaacccaggggagtaccaaccagtgaccatagagggt
gctcacatgcaggggcaagggggtggacaggtggtggagtgggatgcaaaccctcctcaa
aagattatattgacaggtcagaagggccgtacgttacataaagaggaactggtgatgagc
caagcagagaggagtctgcaacataagattagtgagcaggcagctctgtcccaacgcaga
cgtacacaacgccagcaaatgcaagaccagagtgcagagcctcgctctgcctcccctgcc
cctttctcctcagctccacccacacccactaaaggcctgactgctattgggcagaagaag
atccgggtgacaaccagtgatgggcggcaggcaacgctgcagctgcaagcccataatacc
tatgcagatttgcaggaggccatcacccaagctttcaacctccagccccaccaacagtgc
atccggcacggctttcctcctcgagaactcccaccaccaccccctgagcatcaggacctg
cctgtcgccctgcagcatggagaccgcatcactgtggaagtgctcaaggagagtgtccca
gacacacaaataaatactcctaccctgatggaaccttggctcagcagaaccagcagtcga
gagatacaggacaatgttgatctggagatgtcatcactctgtctccttgcaacacttatg
ggtgaggatgtctggtcatatgctaagaagttacctcatctgtttcagcaaggaggagtc
ttttataacattgtaaaaaaagatatgggtctgttggacgggaagcactgcactctgcca
cacttgactggtaagacatttgtgttcaacgcagcagaggaacgtttggagctgtgtgtg
gatactgctggccacttcccagtgggccctaatgtggaagaaattatccaagatgcactc
tcccaactgtgttctgaggctccctctcgcaaccgtgagggaagccctgctcatggccta
aaactgggcagtggaggggtggtgcgcaagaaggagcagactattactgctttccagggc
aagggtcactcactgggttccacctcacatgaccaccagccactcagccaagagcacagc
aatggagtagacttgagtggcagtgtccagggggaggggctagcacagtcaagggaggag
ttggtgcgtgtggctccaggcgtgctcactctgcgtgaaggatgtcgagaagtagaatta
gagcccacagcaattgaggctcagcggcgccgcctacaggaaatggtttcaaatatacag
gcctctatggacaaacacttacggcagcagatgacatctagcaccattactaagcaagat
gagaaggagaaagatctagatgagcaagatgaaataaagagccaggggccagactctcca
agtatctctgagcccatggaccagtctttatga
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