Neoarius graeffei (lesser salmon catfish): 132871652
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Entry
132871652 CDS
T10798
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03030
DNA replication
ngra03410
Base excision repair
ngra03420
Nucleotide excision repair
ngra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132871652 (lig1)
03410 Base excision repair
132871652 (lig1)
03420 Nucleotide excision repair
132871652 (lig1)
03430 Mismatch repair
132871652 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngra03032
]
132871652 (lig1)
03400 DNA repair and recombination proteins [BR:
ngra03400
]
132871652 (lig1)
Enzymes [BR:
ngra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
132871652 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
132871652 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
132871652 (lig1)
DNA replication proteins [BR:
ngra03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
132871652 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
132871652 (lig1)
DNA repair and recombination proteins [BR:
ngra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
132871652 (lig1)
NER (nucleotide excision repair)
Other NER factors
132871652 (lig1)
MMR (mismatch excision repair)
Other MMR factors
132871652 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PH_PLEKHM2
Motif
Other DBs
NCBI-GeneID:
132871652
NCBI-ProteinID:
XP_060761980
LinkDB
All DBs
Position
23:27084532..27186156
Genome browser
AA seq
981 aa
AA seq
DB search
MQRSISSFFQPVRCKEKDGMPKGASESVKSPLKPQNIDKEYDSPVKRSKRSRAIIDSDDE
EQQMVKEVSQQNGKQTATPDKETVGLVKDTTSPHSPNPVVTLPTPAVSVTSGTPEMPVTP
NSTSPSSIPKRKTARKQFPKRKLDSRRDGEGEKEEEQKETRGGQESKRAKIEGFPEKMGN
EESMEVKQKNRSTVKKELLMAKDEGNMNVTNAEKEYKKQNDEMETEQEGENDLLNGNNKE
MKKVTKEEKCSPERVMKTEKDAEEEKREGSAKKKTINSFFAPRKAAVKLEKSDEKSDVEK
KDGEKPAAATASDEREMQGEKDMEPASQSQYDPSKAHYHPIDDACWRKRQRVPYLAVART
FEKIEEDSGRLRNIETLSNLLRSVILLSPDDLLCCLYLCLNQLGPAYQGLELGIGETVLM
KAVAQATGRQLDKIKMEAQEKGDLGLVAESSRSNQRMMFTPANLTAVGVFSKLKEIGNMS
GNSAMNKKIDIIKGLFVACRFSEARYIVRSLTGKLRIGLAEQSVLAALSQAVCLSPPGQE
FPPAVIDAGKGMSAESRRAWFEEKGLILKQTYCEMPNYDVIIPVVLKLGIDELPNHCKLT
PGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILESGEVRIFSRNQEDNT
SKYPDVILRIPQIKKESVLSCVLDSEVVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQV
CVYAFDLLYLNGESLVREPLSKRRALLRQSFMEKEGEFVFARSLDSDNTETIAEFLEQSI
RDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVIGAYLGKGKRAGSY
GGFLLSCYDEENEEFQSVCKIGTGFKDEDLEQLYNFLKEHILPKPRPYYRVDQSAEPDVW
LDAVQVWEVKCADLSLSPVYKAAIGLVDPDKGISLRFPRFLRIRDDKKPEDATTGVQIAD
LYRKQQQIQNQGEKADVEDYY
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatatcgtccttctttcagccagtgaggtgtaaggagaaggatggcatg
cccaagggagcatctgagtcagttaaaagccccctcaaacctcagaacattgataaggaa
tatgattcaccagtgaagagaagtaagcggagccgagcaatcatagacagtgatgatgaa
gagcagcagatggtaaaagaggtttcccaacaaaatggaaagcaaacagccacaccagac
aaagagacggttggccttgttaaggatacgaccagtccgcattcaccaaatcctgttgtt
accctgccaacccctgctgtttcagtaacttctggcacccctgaaatgcctgttacccca
aattccacttcaccctccagcatcccaaaacgcaagactgcccgtaagcagtttcccaag
aggaaattggacagcaggagagatggagagggagaaaaagaggaggaacaaaaagagaca
aggggaggacaggagagtaaacgagcaaaaatagaaggatttcctgaaaagatggggaat
gaggagtctatggaggtgaagcaaaagaacagaagtacggtcaagaaagaactactgatg
gcaaaggatgagggaaacatgaatgtgactaatgctgaaaaagagtataaaaaacaaaat
gatgaaatggaaactgaacaggaaggagagaatgatttactgaatgggaataataaagaa
atgaaaaaggtaacaaaggaggaaaaatgcagtcctgaaagagtgatgaagacagagaag
gatgcagaggaggagaagagagagggatctgccaagaaaaaaaccattaacagtttcttt
gcacccagaaaagctgcagtgaagttggaaaaatcagacgagaaaagtgatgttgagaaa
aaggatggtgagaagcctgcggctgctactgcttccgatgagagagaaatgcaaggtgag
aaggatatggaacctgccagccagagccaatatgatccttcgaaagctcactaccatccc
atagatgatgcttgctggaggaagagacagagagttccatatctggctgttgctcggacc
tttgagaagattgaggaagattcgggcaggttgagaaacattgaaactctgtccaacctt
ctgcgctctgttatcctactctctccagatgacctcttgtgctgcctgtacctgtgtctg
aatcagcttggccctgcctatcaggggctagagctaggcataggggaaacagtactgatg
aaggctgttgcccaggcaactgggcgtcagctggacaaaatcaagatggaggcccaggaa
aaaggtgacctaggattggtagctgagagttcccgtagcaaccagagaatgatgtttaca
ccagcaaatctgactgcagtgggcgtgttcagcaaactaaaggagattggcaacatgagt
ggaaattctgcaatgaataagaaaattgacatcatcaagggtctgtttgtagcttgtcgt
ttctcagaggccagatacattgtacggtcattgacaggcaaactgaggattggattggct
gagcagagtgttttagctgctctgagtcaagcagtatgtctgagtccaccaggtcaagaa
ttcccaccagctgtgattgatgcaggaaaggggatgagtgcggagagcaggagagcatgg
ttcgaggaaaaaggactcatccttaaacagacttactgtgaaatgccaaattatgatgtc
atcatccctgttgtgttgaagttgggcatagatgaactgcccaatcactgcaaacttact
ccaggtgtgcccctgcgccccatgctggcccacccaactaagggagtaggggaagtgatg
aaaagatttgatgaagctgctttcacctgcgaatacaaatatgatggagagcgagcgcag
attcacattcttgagagtggtgaggttcgtatcttcagccgaaaccaggaggacaacacc
agcaaataccctgatgtcattttgcggatcccacagataaagaaggaatctgtgcttagc
tgcgtgttggactctgaggtggttgcatgggacagagagaaaaagcagattcagccattt
caagttcttaccacacgcaaaagaaaggatgtggatgcatctgagattaaggtgcaggtt
tgtgtgtatgccttcgacctgctgtacttaaatggagagtctctggtacgggagccactg
agtaagcgtcgagctttgttaaggcagagtttcatggagaaggagggagagtttgtcttt
gctcgttctcttgattctgataacactgaaactatcgcagagttcctggagcagtccata
cgagactcttgcgaaggattgatggtgaagaccctggagaaagatgccacttatgaaatt
gccaaacgctctcataactggcttaagctgaagaaggattatctggaaggtgtgggggac
acagtggatctgtgtgtgattggtgcatatcttggaaagggcaagagagccggtagctat
gggggtttcctgcttagctgctatgatgaggagaatgaggagtttcagtctgtctgtaag
ataggaacaggcttcaaagatgaagatctggagcagctttacaatttcttaaaggagcac
atccttcctaaaccccgtccctactacagagtggatcagtcagcagagccagatgtttgg
ctggatgctgtgcaagtgtgggaagtgaaatgtgcagatctgtcactgtctccggtttac
aaggcagcaataggattggtggacccagacaaagggatttcccttcgctttcctcgattc
cttcgcatcagagatgacaagaaaccagaggatgctactacaggagtgcagatcgctgac
ctctacagaaagcagcagcagattcagaatcaaggagaaaaggctgatgtcgaggattac
tactga
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