Neoarius graeffei (lesser salmon catfish): 132872875
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Entry
132872875 CDS
T10798
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ngra03016
]
132872875 (rtcb)
Enzymes [BR:
ngra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
132872875 (rtcb)
Transfer RNA biogenesis [BR:
ngra03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
132872875 (rtcb)
Prokaryotic type
tRNA splicing ligases
132872875 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
132872875
NCBI-ProteinID:
XP_060763973
LinkDB
All DBs
Position
2:48433614..48477700
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKVDKTCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGIG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMGDPKAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMGAKDLEEALEMGMDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDNIVVNDRQLACACIGS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFSTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctcttataatgacgagttgcagtttttggataaggttgataagacatgttgg
cgaatcaagaaaggattcgtcccgaatatgcaggtggagggtgtcttctacgtcaatgat
gcgctggagaagctgatgttcgaagagctgcgaaacgcatgtcgtggaggaggtattggt
ggatttctgcctgctatgaagcagatcggcaatgtggcggctctgccaggaatcgtgcat
agatctataggcctgcctgatgttcactccgggtatgggtttgcaattggaaacatggct
gcttttgacatgggtgaccctaaggcagttgtctcaccaggtggtgtcggatttgacatt
aactgtggtgtgcgtctgctgagaaccaacctggatgaaggagatgtgcagccggtgaag
gaacagctggctcaggctctctttgaccacatccctgtaggagtggggtccaagggagtc
attcccatgggtgccaaagacttggaggaggccctggagatggggatggactggtctttg
cgggagggctacgcctgggcagaggataaagagcactgtgaagagtatggccgaatgctg
caggccgacccaaataaagtttcctccaaggccaaaaagagaggactgccacagcttggg
acactgggagcagggaatcactatgctgagatccaggtggtagatgagatctacaatgac
tatgcagccaaaaagatgggcattgaccacaagggccaggtgtgtgtgatgatccacagc
gggagtcgtgggctgggacatcaggtggccacagatgctttggtggccatggagaaggca
atgaagcgcgataacatcgtggtaaatgatcggcaactcgcttgtgcctgcattggttct
cctgaaggtcaggattacctgaagggcatggcggctgcaggcaactatgcctgggtcaac
cgctcctccatgaccttccttacacgccaggccttctccaaagtgtttagcaccacacct
gatgatctggatatgcatgtgatctatgatgtgtcccataatattgctaaagtggaggag
cacatggtggacggtaaacagaaaacactgctggtgcatcgtaagggctcaacacgggct
ttcccccctcatcaccccctcattgccgttgactatcagctgactggtcagcctgtgctg
attggtggtacaatgggcacgtgcagctatgtgttgacaggcactgagcaaggcatgact
gaaacttttggcaccacctgccatggtgcaggtcgagctctgtcccgagctaaatcccgc
aggaatctggactttcaggatgtgttggataaactggctgacatgggcatcgccatcaga
gtggcttcaccaaaactggtcatggaggaggccccagaatcctacaaaaatgtaacagat
gtggtgaacacctgccatgccgccggcatcagcaagaaagcaatcaagcttagacccatt
gctgtgattaagggttaa
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