Neoarius graeffei (lesser salmon catfish): 132873140
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Entry
132873140 CDS
T10798
Symbol
smfn
Name
(RefSeq) small fragment nuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
132873140 (smfn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132873140 (smfn)
03009 Ribosome biogenesis [BR:
ngra03009
]
132873140 (smfn)
Messenger RNA biogenesis [BR:
ngra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
132873140 (smfn)
Ribosome biogenesis [BR:
ngra03009
]
Eukaryotic type
Pre-60S particles
RNases
132873140 (smfn)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-GeneID:
132873140
NCBI-ProteinID:
XP_060764395
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All DBs
Position
25:2171812..2180827
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AA seq
272 aa
AA seq
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MAALVRVVSCPCRAALFTRVASGLLFRTKRQQEGFNLHPFSHHQTTRVLFSNIQLQNSAE
MSVSFSTSSSSSEAMSQRMVWVDLEMTGLDIEKDEIIEMACIITDSDLNIVAEGPNLIIN
QPDSLLDSMSDWCKEHHGKSGLTQAVRDSKISLQQAEYEFLSFIRQHTPPGQCPLAGNSV
HADKKFLDKYMPQFMRHLHYRIIDVSTVKELCRRWFPDMYKHAPQKKASHRALDDIQESI
KELKFYRATVFKSEGEEKKRKIVENGESKHAA
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctggtgcgggttgtgtcgtgtccctgccgcgctgcgcttttcactcgagtc
gcttctggtttgttgttcaggactaaacggcagcaggagggattcaatcttcaccccttc
agtcatcatcaaaccaccagagttttattctccaacattcagctgcaaaactcagcagaa
atgtcagtttctttctccacatcatcatcatcttcagaagccatgagccagaggatggtg
tgggtggatttggagatgacgggactggacatagagaaggatgagattattgagatggcg
tgcatcatcacagactcagatctcaacatcgttgctgagggtccgaatctgatcatcaac
cagccggacagtctgctcgacagcatgtcggattggtgcaaggagcatcacgggaagtca
gggttgacgcaggcggtacgtgacagtaagatctcactccagcaggctgagtatgagttc
ctgtccttcataagacagcacacgcctccgggccagtgtcctctcgcaggtaactctgtg
catgctgataagaaattcctggacaagtacatgccccagtttatgcgtcatctccactat
cgtatcattgatgtgagcactgtcaaggagctctgcagacgctggtttccagacatgtat
aaacatgctcctcagaagaaagcttcacacagagcgctggatgacattcaggagagcatc
aaagagctcaagttttacagagcgaccgtcttcaaaagtgaaggagaagagaagaaaagg
aagattgttgaaaacggagagagcaaacacgcagcctaa
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