Neoarius graeffei (lesser salmon catfish): 132873300
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Entry
132873300 CDS
T10798
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55 isoform X1
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ngra03009
]
132873300 (ddx55)
Enzymes [BR:
ngra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132873300 (ddx55)
Ribosome biogenesis [BR:
ngra03009
]
Eukaryotic type
Pre-60S particles
Helicases
132873300 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
CTT_SPB4
ResIII
SBF_like
Helicase_C_2
Cas3-like_C_2
RIC1
Motif
Other DBs
NCBI-GeneID:
132873300
NCBI-ProteinID:
XP_060764678
LinkDB
All DBs
Position
25:13545121..13573916
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AA seq
613 aa
AA seq
DB search
MSKTEKLQSRAMESISDGKWDNLPVKLHDSILLTLKKLGFTYMTPVQSACIPLFMSNKDV
AAEAVTGSGKTLAFVIPLIEILMKREEKLKKMQVGALIITPTRELAIQISEVVGQFLEEF
PQFRHILLIGGSNPIEDVEKFKTNGANIVIGTPGRLEDMFRRKADGLDLASCVKALDVLI
LDEADRLLDMGFEASLNTILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKG
VAATSVQKTPARLSNYYTICRTQDKFNTLVAFLRQHKHEKQLIFFSTCACVEYFGRALEV
LIKNVTILCIHGKMKDKRNKIFSEFRELKSGILVCTDVMARGIDIPDVNWVLQYDPPSSA
SSFVHRCGRTARIGNRGNALVFLLPMEESYVNFLSINQKCPLQPYPPVKDVVDVLPKLKA
LALGDRAVFERGMRAFVSFVQAYAKHECSLIFRLKDLDFADLARGFALLRMPKMPELRGK
TFPDFEEITNTDSIRFKDKNREKQRQKSLQEQKEREKDAPSRKRNFIKNQAWSKQKSKKD
KKRKIAAKRKMNEGSDVDDEDIDELLSDTRLLKKLKKGKISEEDFDKQMSAGRSSKHKRS
DPSHEDSAEGKSE
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacagaaaaactgcaaagcagagctatggagagtatcagcgatggaaaatgg
gataatttgccagtgaaacttcacgacagcatactgctgactctgaagaaacttggattt
acttatatgactccggttcagtcagcatgcatccctcttttcatgagcaataaagatgtc
gcagctgaagcggttacaggcagtgggaagactcttgcttttgtcattcctctgatagaa
atcctcatgaaacgtgaggagaagctgaagaaaatgcaagttggtgctttgatcatcaca
ccgacccgcgagctggccatccagatcagtgaagttgtaggccagtttcttgaagagttt
cctcagttcaggcacattcttttaattggtggaagcaaccccattgaagatgtagaaaag
ttcaagaccaatggcgcgaatatcgtgatcggaacgcctgggcgactggaggacatgttc
aggaggaaagctgatggccttgacttggctagctgtgtgaaggctttggacgtgcttatt
ctagatgaagctgacagactcctggacatgggctttgaagcaagcctcaacactattttg
ggttatttgcccaagcagaggcgtacaggccttttctcagcaacgcagactcaggaactg
gagaagctggtgagggctggcctccgaaacccggtccgtatcactgtgaaggagaaagga
gtggcagctacaagcgtccagaagacaccagcgaggcttagtaattactacacgatctgt
cgaacacaagacaagtttaacacgctggtggctttcctgagacaacacaaacatgagaag
cagctcatcttcttcagcacgtgtgcctgcgtggagtatttcggcagagcgctggaggtc
ttgatcaaaaatgtcaccattctttgtatccatggcaagatgaaggacaagcggaacaag
atcttctccgagtttcgggaattaaagagtgggatactcgtgtgcaccgacgtgatggca
agaggcatcgacatcccggatgtgaactgggtgctacagtacgatcctccaagtagcgca
agttcttttgtgcatcgatgtggccgaactgctcgtatcgggaaccgaggcaatgctctt
gtctttctcctgccaatggaggaatcctacgtcaatttcctgtctatcaatcaaaaatgt
cctctccagccgtatcctcctgtaaaggacgtagtggacgtgttgcccaaactgaaggct
ctggcgttaggcgacagggccgtttttgagagaggaatgagggcgttcgtctcgtttgtc
caggcttacgcaaagcacgagtgcagcctaatattccgactcaaagatctggactttgct
gatttagctcgaggctttgctcttcttcgtatgcccaagatgccggagttgagaggcaag
acgttccctgactttgaagagatcacaaacacggactcgatccgcttcaaggacaagaac
cgagagaaacagaggcagaaatctttacaagagcaaaaggaaagggaaaaggacgcaccg
tcccggaaaaggaacttcattaagaaccaagcctggtccaagcagaaatccaagaaggat
aagaagaggaagatagctgccaaaaggaagatgaatgagggatcagatgtggatgacgaa
gacattgacgagcttttgagcgacacacgtctactgaagaagctcaagaagggaaagatt
agtgaggaagactttgacaagcaaatgagtgcaggaagaagttcaaagcataaaagatca
gatccctctcacgaggacagcgcagaaggaaagagtgaatga
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