Neoarius graeffei (lesser salmon catfish): 132873389
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Entry
132873389 CDS
T10798
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ngra03000
]
132873389 (rc3h2)
04121 Ubiquitin system [BR:
ngra04121
]
132873389 (rc3h2)
Transcription factors [BR:
ngra03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
132873389 (rc3h2)
Ubiquitin system [BR:
ngra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
132873389 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-CCCH
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf_CCCH_4
zf-C3HC4_4
zf-CCCH_UNK
zf-CCCH_4
zf-RING_10
zf-C3HC4
zf-CCCH_DUS3L
Motif
Other DBs
NCBI-GeneID:
132873389
NCBI-ProteinID:
XP_060764876
LinkDB
All DBs
Position
25:56812897..56856245
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AA seq
1044 aa
AA seq
DB search
MPVQAAQWTEFLSCPICLNEFNAGGHKPISLGCSHTVCKTCLHKLHRKACPFDQTTISID
IELLPVNRALLLLVGVQVPESQSVCLGSAEDTQHYDVCRTCVEELALYLKPITGGKGTGT
TISLSCVCARVRERSGVASQSASALSRPMQRKLVMLVNCQLVEEEGRVRALRAARSLGER
TITELILQHQNPQQLSANLWAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVL
FVVQKLEARFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHD
AQIVHIAMEAGLRISPEQWSSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRT
GDPANLNILRAPLELLAGIDQNLDAAIPSWEELESAMFAVKVVVHGLVEFIQNFSKKSHE
TFPSQPNSKYKTSMCRDLRQQGTCPRGVNCTFAHTQDELEKYRMRNKKVCSGTRPSLLPK
TGAVKSSAVDVCVGEQECVASEGSSPTRLVPRGGEQEHDVMKELAEGFPATSQDLKTGSP
PKSPASGPPSDTSLLLKPSSLPQRGHHEVTYFPEQRSAYELPSCPSANFFPTSLPNPHKP
YLPRITRSSPTSDSSVPPPLAAPYPDPSLPSRLGLSPYPPSPSYPPLPHSHTHGVYAPVY
DSRRLWRPQLYHRQDGRSNSLPLEVLHSSIYHPPLRERFNSLDSAYCSASSRRAALHREA
YGRAALGSEDFYSLRQDQWSHQHHGSGRAAQHSTVFTVDLCSEHAESGVCVSCKCGGADT
PLGRYSPWSCGAVGPFDSEPVYSHTCSQHMQDSECTAKRWLHVSEPYRRVKDEDPIIPFS
EGPIISKWGAISRSSRTDHHTTEPIQATATHGRTTTTTLINLRADYSSHVGQGECRWSPC
GFESNHSGFRESTTGKHGPEFLAQDGTESDPDRDIELELCALHIEDSEPPGIQSEASLEP
RCENRLSSVFSDGAGSLGTLHSLSGHTVDAHLLKKMAFRKSLSPGGLNAGGLAVGGLVMK
TGSIRPPGDAAGPSPGPEMILNGS
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtgcaggcagcgcagtggacggagttcctgtcctgccccatctgcctgaacgaa
ttcaatgctggtggacacaaacccatcagtctgggctgctcacacaccgtgtgtaaaacg
tgtctccacaaactgcaccgtaaggcctgtccctttgaccagaccaccatcagcatcgac
atcgagctgctgcccgtcaaccgcgccctgctgctgctagtgggggtgcaggttcctgaa
agccagagtgtgtgtttgggcagcgctgaagacacacagcattatgatgtgtgcaggaca
tgtgtggaggagttggcactgtacctcaaacccatcacaggggggaaaggtacaggcaca
accatcagtctcagctgtgtgtgcgcgcgcgtgagagagagatctggtgtggcatctcag
agtgcgagcgcgctcagtcggcccatgcagaggaagctggtgatgctggtgaattgccag
ctggtagaagaggagggtcgtgtgagggcactgcgggcagctcgctctctgggagaacgc
accatcactgagctcatcctgcagcaccagaacccacagcagctttccgccaacctgtgg
gctgctgtccgggcgcgggggtgtcagttccttggacctgcgatgcaggaggacgcactg
aagctcgttctgctggctctcgaggacggctcggcgctctctcggaaagttctggtgctt
ttcgtggtccagaagctggaagctcggttccctcaggcctccaagacgagcatcggtcac
gtggtgcagcttctgtaccgagcttcatgcttcaaggtgacgaagcgtgatgaagactcc
tcgctgatgcagctgaaggaggagtttcgtacgtacgaggctttgaggcgtgaacacgac
gcccagattgtccacatcgccatggaggcggggctccgcatttctcctgaacagtggtcc
tctctgctgtacggcgacctcgtccacaaatcacacatgcagtccattatagacaagctc
cagtccccagaatcctttgcaaagagcgttcaggagctgacgatagtcctgcagagaact
ggagacccggccaacctcaacatcctccgagcgccgctggaactcctggctggcattgac
cagaacctggatgcagccatcccctcatgggaggagctcgagtctgcgatgtttgcagtg
aaggtcgtggtccacgggctcgtcgagttcatccagaatttcagcaaaaagagtcatgag
acatttccgtctcagcccaacagtaaatacaagaccagcatgtgccgagacctgcggcaa
caaggaacctgcccacgcggtgtcaactgcacgttcgcccacacccaggacgagctggag
aaataccgaatgaggaataagaaggtctgctcaggaacccgtccgtctcttctgcccaaa
actggtgctgtgaagtcctcagctgtagacgtgtgtgtgggtgagcaggagtgtgtggcc
tcggaaggctcctcccccactcgtcttgtgcccagaggaggagagcaggaacatgatgtg
atgaaggagttggctgagggatttccagctactagccaagacctgaaaactggttctcct
ccgaagagtcccgcatcaggacctccttcagacacctcactgctcctcaaaccctcttct
ctaccccaaagaggtcaccatgaggtcacatactttcctgagcagagatctgcgtatgag
ctaccgtcctgcccatctgctaattttttcccaacttctcttccaaaccctcacaaaccc
tacctgcctcgcatcactcgctccagccccacctctgactcctcagtaccacctcctctg
gctgctccctaccctgacccgtccctcccatctcgtctaggcttgtctccgtatcccccc
tccccctcttatccacccctccctcactctcacactcatggcgtgtacgctcccgtctat
gacagtcggcgtctctggaggcctcagctgtaccatagacaggacggccggagcaactcg
ctccctctggaggtgctgcactcgtccatctatcatcctcctctccgggagcgcttcaac
tcgctcgacagcgcctactgcagcgcctctagcaggagagccgccctgcaccgcgaggcg
tatggccgcgccgctctgggctctgaggatttctactctctccgtcaggaccagtggtca
catcagcatcatggctcgggccgagcagcacagcattccactgtcttcaccgtggatctc
tgctctgagcatgcggagagcggagtgtgtgtgagctgtaagtgtggaggtgcagacacg
cctcttggccgttattcaccgtggtcgtgtggtgctgtcggtccgtttgactcggaacct
gtttactctcacacatgttcccaacacatgcaggacagtgagtgcacggcgaaacgctgg
ctgcacgtttctgagccatacagacgtgtgaaggacgaggaccccatcatcccgttcagc
gagggtcccatcatctcaaagtggggcgcaatttcacgctcgtctcgcacagaccaccac
accaccgaacctattcaggccacggcgacgcacggccgcacgaccaccaccacgctcatc
aacttgagagcagattacagctctcatgtgggacagggtgagtgccggtggagtccgtgt
gggtttgagtcaaatcactccgggttccgagaaagcactaccggaaaacatggacccgag
ttcctggctcaagatggaacggagagtgacccggaccgagacatcgaactggagttgtgt
gctttacacatagaggactcggaacccccggggatccagtcagaggcatctttggagcct
cggtgtgaaaatcgcctctccagtgtgttcagtgatggagcaggaagcttggggacgctg
cactcgttatctgggcacacggtggacgctcatttactgaagaagatggcgtttcggaag
tctctctcccctggaggcttgaacgccggaggtctcgctgtgggtggtctggtgatgaag
acgggttcgataagacctccaggagacgcagccggaccgagcccaggacccgagatgatc
ctaaacgggagctaa
DBGET
integrated database retrieval system
