Neoarius graeffei (lesser salmon catfish): 132873393
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Entry
132873393 CDS
T10798
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03018
RNA degradation
Brite
Enzymes [BR:
ngra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132873393 (mtrex)
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
132873393 (mtrex)
Spliceosome [BR:
ngra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132873393 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
132873393 (mtrex)
Ribosome biogenesis [BR:
ngra03009
]
Eukaryotic type
Pre-60S particles
Helicases
132873393 (mtrex)
Transfer RNA biogenesis [BR:
ngra03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
132873393 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Death_3
Motif
Other DBs
NCBI-GeneID:
132873393
NCBI-ProteinID:
XP_060764892
LinkDB
All DBs
Position
25:50272155..50370363
Genome browser
AA seq
1034 aa
AA seq
DB search
MADAFGDDLFSVFDDEQTTSSKKPSSKTDARFGKTAGTERTESSSGTKAKREAENDGADE
VSFGKKAKLEMPLSEDINLSDLMPKVKVEQVETVEGCTHEVALPADQEYTPLKPRVGKAA
KEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALKAKQRVIFTSPIKA
LSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVVFDE
IHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHTQPCHVVYTDYRP
TPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDPGASGGGKWDPKGRRGGT
KGSSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDDEKKLVEEVFSNAT
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAMG
INMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAVG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMQKL
EEMYNSIEIPNEDSVVTYYKIRQQLAKLAKEIEEYVHKPKYCLPFLQPGRLVKVKKDDLD
FGWGVVVNFSKKSNVKASTGDLDPLYVVEVLLHCSKESVKNAATEAAKPAAQGEKGEMQV
VPVMLNLLTSVSSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGLPLLDPIDDMGIKDS
GLKKVIQKVEAFEHRMYTHPLHTDPSLGAVYALCEKKAVVAGDIKAAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEVKGRVACEISSADELLLTEMMFNGLFNDLTAEQLTAL
LSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLDVDEDTYLNQFRPHLMD
VVYTWANGASFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFALGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggagacgatttgttcagcgtttttgatgacgaacagacgacttct
agtaaaaagccgagctcaaagactgatgctcgattcgggaaaacagctggtacagaaagg
acagaatcctcatctggaacgaaggcgaaacgagaggcagaaaacgatggggctgatgag
gtttcgttcggtaaaaaggccaaactggaaatgccgctatcggaggatatcaatctttca
gacttgatgccgaaagtcaaagtggagcaggttgagacggtggagggctgcacgcacgag
gtggcactgcctgcagatcaggaatatacaccgctgaaaccacgagtaggaaaagcagcc
aaggagtacccattcattcttgacccatttcagcgcgaggccattctgtgcatcgacaac
aaccagtctgtcctcgtctccgctcacacctcggccgggaaaaccgtgtgcgcagagtac
gccattgctctggctctgaaagcgaagcagcgagtgatcttcaccagccccattaaagct
ctgagtaatcagaaatacagagaaatgtacgaggagttccaggacgtgggactgatgact
ggagatgtgactattaaccccactgcctcctgcctcgtcatgaccaccgagattttgagg
agcatgctgtaccgggggtcagaggtcatgcgtgaagtggcctgggtcgtatttgacgag
atccattacatgagagactctgagcgtggtgtggtgtgggaggaaaccatcatccttctt
cccgataacgtacattacgtctttctgtcagccaccatcccaaacgcgcggcagttcgcg
gagtggatctgtcacctgcacacacagccttgccacgtggtgtacacagactaccgaccg
actccgctgcagcactacatatttccagcaggtggcgacgggcttcacttggtcgtggat
gagaacggtgagttcagggaggataactttaacacagccatgcaggttctccgagatgct
ggagaccccggagcgagtggaggagggaaatgggaccctaaaggaagaagaggagggacc
aagggttcatccaatgtgtttaagattgtgaagatgatcatggagaggaacttccagccg
gtcatcatcttcagcttcagtaagaaggagtgtgaggcgtatgctctacaggtgtccaaa
ctcgacttcaatacagatgacgagaagaaactggtggaggaggttttcagcaacgccaca
gactgtctgtcagatgaggataaaaagctgccacaggtggagcacgttctgcctctgttg
aagagaggaattgggatccaccatggcggactgctgcccatcctgaaagagaccatcgag
attctcttctctgagggactactgaaggccttgtttgcaacagagacatttgccatgggg
atcaacatgcctgctcgcaccgtgctcttcaccagcgcacgcaagttcgatggcaaggac
ttccgctggatcagctcgggagaatacatccagatgtcaggccgagccgggaggagaggg
atggacgaaagaggaatagtcatctttatggtggatgagaagatgagtccagctgtgggg
aagcagctcttaaagggttctgctgaccctctgaacagcgccttccacctcacctacaac
atggtcctgaacttgctgcgcgtggaggagattaaccccgagtacatgctggagaagtcc
ttctaccagttccagcactacagagcagtccctggtgtagtggagaagatgcagaaactg
gaggagatgtacaacagcatcgagattcccaatgaggacagcgtggtcacttactataaa
atccgccagcagttagccaagctcgccaaagagatcgaggaatacgtgcataaacccaaa
tactgcctgcctttcctccagcccggccggctcgtcaaggtaaaaaaggacgatttggat
ttcggctggggcgtcgtcgttaatttctccaagaaatcaaacgtcaaggccagcactggt
gatctggatcctctgtatgtagtggaagttttattacactgcagtaaggaaagcgtgaaa
aatgctgcaacagaagcagccaaaccagcagcacagggagagaaaggagagatgcaggtg
gtgcccgtcatgctgaatctcctcacctccgtcagctccgtgcggctttacatccccaaa
gacctgcggccctacgacaaccgacagagcatgcttaaatccatacaggaggtacagaaa
cgtttccctgatggtctccctctgttagaccccattgatgatatgggtattaaagactct
ggactgaagaaggtcatccagaaggtggaggcctttgagcacaggatgtacacacaccca
ctccacactgaccccagcctcggggctgtctacgcactctgtgagaagaaagcagtagtt
gcaggtgatatcaaggcagcaaaacgggagttgaagaaagcccggaccgtgctacagatg
gacgagctgaagtgtcggaagcgagtgctgcggcgcctcgggttcgccacgtcctccgac
gtcatcgaggtgaaggggcgggtcgcctgcgagatcagcagtgcggatgagctgctcctg
accgagatgatgtttaacggtctctttaacgacctgacagctgagcagttgacggcttta
ctgagctgctttgtcttccaggaaaatgctaatgagatgcctaaacttacagagcagtta
gcaggcccactccgacagatgcaggaatgtgccaagcgcatcgctaaagtctcagccgag
gcgaagctggacgtggatgaggacacttacctgaaccagttccgtcctcacctcatggat
gtagtgtacacttgggccaacggagcctcgttctctcagatctgcaagatgacggacgtt
tttgaaggcagcattattcgctgcatgaggcgtctggaggagcttctgaggcagatgtgc
caagcagccaaggccatcgggaacactgagctggagaacaagttcgctctcggcatcacg
aagatcaagcgtgacattgtgtttgctgccagtctttacctctga
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integrated database retrieval system
