Neoarius graeffei (lesser salmon catfish): 132873511
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Entry
132873511 CDS
T10798
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngra03021
]
132873511 (chd1)
03036 Chromosome and associated proteins [BR:
ngra03036
]
132873511 (chd1)
Transcription machinery [BR:
ngra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
132873511 (chd1)
Chromosome and associated proteins [BR:
ngra03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
132873511 (chd1)
SLIK complex
132873511 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
132873511
NCBI-ProteinID:
XP_060765149
LinkDB
All DBs
Position
25:complement(40442238..40485969)
Genome browser
AA seq
1816 aa
AA seq
DB search
MDGRSEDESVSNSSGESSNSDDGSGSGSGSGSGSSSSSSSSSSSQSGSSDSGSGSDSGSQ
SDSDSEKSKGKNGQNNSAKIDSTEFWKSNPSILAVQRSALLRKQQQQQQQSSSNSDSDEE
SSSSDDSDDDSSRKRKSKGSGSDSDSASGSDSDSGSGSDSSNSSGEEEVENSEESVSDYE
PSHKVKSRKPPNKANARNGKKSKASKKKPSTSSSDEDDDYKKALAGPRRQATVNISYKEA
EELKTDSDDLVEVCGEDVPPPEEDEFETLERVMCVRIGLKGATGATTTVYAVEADGDPNA
NFNPNKQPGDVQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNFKKKDQEKKKWLKA
ASPEDVEYFNCQQELMDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPYSECSWED
GALIARKFQKYIDAYMSRNQSKTIPSKDCKFLKLRPRFVPMKKQPHYIGGEGLELRDYQL
HGLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQ
REIHLWAPQMNVVVYLGDISSRNMIRTHEWMHAHNKRLKLNILLTTYEILLKDKSFLGNV
SWAFIGVDEAHRLKNDDSLLYKTMIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFH
SWERFEEEHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYY
KWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDNDFHNRTEALQHLIRS
SGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILADYLRSRQFLFQRLDGSIKGEMRKQA
LDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQ
VNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSSTPFNKEEL
SAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVANFS
MMEEEDMDMDTSGNQKTWDTIIPEEQRRRLEEEERQKELAEIYMLPRMRNCAKQISFNGN
EGRRSRNRRYSGSDSDSASDRKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPL
ERLDAIARDAELVDKSEHDLRRLAETVHNGCVRTLRENPCGPEKASGGRRGKVKGPTFRI
SGVQVNAKLVISHEEELAPLHKAIPADPEERKRYMLPCHAKAAHFDIEWGKEDDSSLLIG
IYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQR
QMGMANFRKRKPRGKKNKTVKPKVDEVVNSLSSAPPSEKSSEDEEDKEDEKDSPPTKPPP
NRRGRALDRVVKEEEEDDDDDDEEEEEEEEEEDEEEEPEPEHHVKEPEEKEIKDREIKKD
VKREKKEEGRDNKDKKEPKEKKESKPVEHKMEESFTEKTPEIKAEIRDKSKKADVHITAG
ENVPVSEESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDH
ITDCLKEYTNLEHIKQWRRNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQTADQNTST
VNTQAFRHTDIERLKESQQDESSRDSYSSDRHHSSSRSHEQSKERHSSDSYRKSSDSRKR
PYSSFSNGKDHRERDHYRERQDSRYYSDSKHRKLDDHRSSRDSWSDSNNKERVHSEQRSH
SEHRSSSDYSHHKASRDYRYHSDWQLEQRASGSGPRSPRDQRSPYDSRSPMGHRSPFEYS
SEHKTTPEQVWSSRKT
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
atggatggccgcagtgaagatgaaagtgtgagcaacagtagcggagaatccagtaactcg
gatgatgggtctggatctggatctggttccggttccggttctagctccagcagtagcagc
tccagtagcagccagtcagggagtagcgactcaggaagtggctcagactcgggcagccag
tccgattctgactctgaaaagtccaaggggaagaatggtcagaataactctgccaagatt
gattccacagaattctggaagtctaatcccagtatcctggcagtgcagaggtcagctctg
ctcaggaaacagcagcaacaacagcaacagagctcctcaaacagtgactcggatgaggaa
tcctctagtagtgatgactcagatgatgactcttcgaggaagcgaaagagtaaagggtct
ggatctgactcggactctgcgtctggatctgactcggactctggttcagggagtgactcg
tctaattcttcaggcgaagaagaggtggagaacagtgaagagtccgtttcagactatgaa
cctagccacaaagttaaaagcaggaagccacctaacaaggctaatgccagaaatggaaaa
aagagcaaggcttcaaaaaagaagccctcaacttcttcgtcagacgaggatgatgactat
aaaaaggctctggctggtcctcggaggcaggctacagtgaacatcagctataaggaggct
gaagaactgaaaacggactctgacgatttggtggaggtgtgtggggaggacgtcccaccg
cctgaggaagatgagtttgagactctggaaagagtcatgtgcgtaagaataggattaaaa
ggagctactggggcgaccaccacagtctatgctgttgaggctgacggagaccctaatgcg
aacttcaacccaaacaagcagccaggagacgtgcagtacttgatcaaatggaaaggctgg
tcacatattcacaacacttgggagacggaggagacactgaagcagcagaacgtgaagggc
atgaagaaactggataatttcaaaaaaaaggatcaggaaaagaaaaagtggctcaaagca
gcttcacctgaagatgtggaatacttcaactgccagcaggagctcatggatgacctgcat
tcacaatatcagcttgtggagaggattattggccattcaaatcagaagtcggcagcaggc
tacccagactacttatgcaaatggcaagggcttccatattcagaatgcagctgggaagat
ggggcacttattgctcgaaagttccagaagtacatagatgcctacatgagccggaaccag
tccaaaacgatcccctccaaggactgcaagtttttaaagctgaggccgcggtttgtgcct
atgaagaaacagcctcattatatcggcggggaagggcttgagcttcgagactaccagctg
cacggcttaaactggatggcccattcgtggtgcaaagggaacagttgtattctggcagat
gagatgggccttggaaagaccattcagaccatctcctttctgaactatctgttccatgag
catcagctctatggaccattcctgttggtggtacccttgtctacactcacttcctggcag
agggaaatccatctctgggccccgcagatgaatgtggtcgtctacctgggtgacatcagc
agtaggaacatgatcagaacacatgagtggatgcatgcccacaacaagcggctaaagctg
aacatcctcctcacaacgtacgaaatcctcttgaaagataagtcgtttctggggaacgtg
agctgggcgttcattggtgtggacgaggcccacaggttgaagaatgatgattcccttttg
tataagaccatgattgatttcaagtccaaccaccggctccttatcacaggaacacctttg
cagaattccctcaaagagctgtggtcgctcctccacttcatcatgccagagaagtttcac
tcatgggaacggtttgaggaagaacatggtaaaggcagggactcgggctacactagcttg
cataaggagctggagccttttctcctacgaagggtcaagaaggatgtggagaagtcacta
cctgccaaggtggaacagatccttagggtggagatgagtgccatccagaaacaatactac
aagtggatcttgacgagaaactacaaggcacttagcaaaggcacaaaaggaagcacgtct
ggtttcctcaacattatgatggagctgaagaagtgctgtaaccactgctacctcatcaaa
cctccagaggacaatgacttccacaacagaaccgaggccttgcagcacctaatccgcagt
agcgggaagctggtacttctggacaagctcctggtgcgactgaaggagcgtggccaccgt
gtgctcattttctcacagatggtcaggatgctggacatccttgcagattatctgaggagt
cggcagttcttattccagaggttggatggttccatcaagggcgagatgaggaagcaggca
ttagatcattttaatgcagaaggttctgaggacttctgtttcctgttgtccacacgagca
ggtggcctgggcattaacttggcttctgcagatacggtcgtcatctttgactcagactgg
aacccccaaaatgacctgcaggcacaggccagagctcacaggatcgggcagaagagacag
gtaaatatttatcgtttggtgactaaggggtctgtggaagaagacattattgagcgagcc
aaaaagaagatggtgctggaccaccttgttattcagaggatggacactacagggaaaaca
gtccttcatactggtgctgctccttccagcagttccacccctttcaacaaagaggaactg
tctgctattttgaagtttggtgctgaagaactttttaaggagccagagggagaagaacaa
gagccccaggagatggatattgatgagattctgaagagagcagagaccagggaaaatgat
cccggtccatctactgtaggagaagagctcctctcgcagttcaaggtggcgaatttctcc
atgatggaggaagaagatatggacatggacacaagcggcaaccagaagacctgggataca
atcatccctgaagagcagcggagaagactggaggaagaggagagacaaaaggagctagca
gagatctacatgctgcctcgcatgaggaactgtgccaagcagataagctttaatggtaac
gagggcaggcggagccggaacagaaggtattctgggtctgacagtgactctgcctcagac
cgaaagaggcccaagaagcgaggcagaccacgaactattcctcgagagaacatcaagggc
ttcagtgatgctgaaatacgaaggtttatcaagagttacaagaaatttggtggccctttg
gaaaggctggatgctattgcccgggatgctgagctggtggataaatctgagcatgatctg
aggcggctagcagagacggtacataacggttgtgtgagaaccctgagggaaaatccatgt
ggaccagaaaaagcctcaggaggcaggagagggaaggtgaagggacctaccttcaggatc
tcaggtgttcaggtcaatgctaagctagtaatctcacatgaggaggaactggcccctttg
cacaaagccattcctgctgacccggaggagaggaagaggtatatgcttccctgccatgca
aaggcagctcattttgacatcgagtggggcaaagaagacgactccagccttcttattggg
atttatgagtatggctatgggagctgggaaatgattaagatggacccagaccttaacctt
acccacaagcttttaccagacgaccctgataagaaaccacaggctaaacagctccagaca
cgagccgactacctcatcaaattactcagcaaggacctcgccaaaaaggaggcccagagg
caaatgggcatggctaatttccgaaagaggaagccacggggaaagaagaataaaactgtg
aaaccaaaagtggatgaagtggtcaacagtctgtcctctgctcctccttccgagaaaagc
tcagaagatgaggaagacaaggaagatgaaaaggactctccacctaccaagccaccaccc
aacaggagggggcgagctttggaccgtgtggtaaaggaagaagaagaagacgacgacgac
gatgatgaagaggaggaagaggaagaagaagaggaggacgaggaggaggaaccagagcca
gaacaccacgtcaaagagccagaggagaaggagataaaagacagggagataaagaaagat
gtcaaacgggagaagaaagaggaaggtcgggacaacaaagacaaaaaggaacccaaagag
aaaaaggaaagcaagcctgtggagcataaaatggaggagtctttcacagagaagactcca
gagataaaagctgaaattcgtgacaaaagcaaaaaggcagatgtccatatcactgctgga
gagaatgttccagtctctgaggaatctgaagagcttgaccagaagaccttcagcgtgtgt
aaggaacgcatgcggccagtgaaggcagccttaaaacagctggatcgtcctgagaaaggt
ctttctgaacgagagcagctagagcatacaaggcagtgcctaatcaaaattggagaccac
atcacagactgtctaaaagaatacaccaacctcgaacacatcaagcagtggaggagaaat
ctttggatatttgtttccaaatttacggagtttgatgcaagaaaactgcataaactgtat
aagcatgcaatcaagaaaagacaggaaaacgctcagacggcggaccaaaacactagcact
gtaaatacacaagcctttagacacacagacattgagcggttaaaggaatctcagcaggac
gaaagcagtagagacagctacagttcagacagacaccactcgagctcgcgtagccacgag
cagagcaaagagcgccattccagcgattcgtataggaaaagctcggactccaggaagaga
ccatattcctccttcagcaatggcaaagaccaccgagagcgagaccactacagagagcgt
caggacagccgatactacagcgacagcaagcataggaagctagatgatcaccgttctagt
cgagacagctggtcagacagcaacaataaggagcgtgtacactcagagcagcgttctcac
tcggagcatcgctccagctcagactacagccaccacaaggcctctcgtgactaccgctat
cactcagactggcaattggagcagcgtgcgtcaggtagcggaccacgttctcctcgagac
cagagatcgccctacgactcccggtcgcctatgggccaccggtcgccttttgagtactct
tccgagcacaagaccacacctgaacaggtctggagcagtcgtaagacatag
DBGET
integrated database retrieval system
