Neoarius graeffei (lesser salmon catfish): 132873831
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Entry
132873831 CDS
T10798
Symbol
pcdh1a
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
132873831 (pcdh1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ngra01009
]
132873831 (pcdh1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ngra04515
]
132873831 (pcdh1a)
Protein phosphatases and associated proteins [BR:
ngra01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
132873831 (pcdh1a)
Cell adhesion molecules [BR:
ngra04515
]
Cadherins
Protocadherins
132873831 (pcdh1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
PepSY
Fibulin_C
PDGLE
Motif
Other DBs
NCBI-GeneID:
132873831
NCBI-ProteinID:
XP_060765613
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All DBs
Position
25:complement(2636266..2752879)
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AA seq
1184 aa
AA seq
DB search
MDFSVGLYLLWALVLNFGRGTLGGILYRVREEQPPSTLIGSLAADQGLPDSGHLYKLEVG
TPYLRVDGKTGEIFTTEIPIDRETLKDCRMKGKPCFLEFEVSVTDLIQNQSPRLIEGRIE
VLDINDNTPQFPSPVLTLSVQENTHMGATFSIPLATDKDTERNGVADYTLSAGPEAVALF
GLQVADDRGEKLPQLIVMGNLDREFKDSYDLTIKVVDGGSPPRYSSALLRVVVTDANDNA
PKFEKSSYEAEVSENSPVGHSVLQVKANDSDLGPNGEIEYIIHQASDPVPKLLQIDRSTG
IIYVKGPLDREELNSLKFHVIARDRGPSPKSSTTYITVEVTDQNDNAPAVEIRGIGLRTH
SDGVANISEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRPAGDSSVDNKKKYF
LQTTTPLDFERVRDYRVEIVAVDSGNPALSSTNSLKVQVTDINDNSPIFSPPVFEIEFSE
ENQPGEKVLDVIAVDADSGTNAELIYSIVADSSTKGLFEIDPNTGEVRARSPLDREHKER
YEFRVTAADKGVPSHRGTATVVIKVLDRNDNDPKFMLSSYSFSVLENMPPLSPVGMVTVL
DMDKGENSQVQLSVEPDVGKFVVQNGTGTILSSISFDREKESSYSFRLKAVDGGEPPRSS
YVGVTINVLDENDNAPVVTKPSNSSFTRLSPLAAPDSVVEVVEAEDIDSGSNAELVYSIA
GGNPHELFYISPSDGEIKLTKELTRKHGGLHRLVVKVSDRGKPSRHAIALVHIYVNETIS
NISLVEGLVGHSLYTPLDTDIAGDPDYGLAAQRSNILYGSLAGVAGVVTVILVVVFIRHR
LQRETKSGYQAGKKETKDLYAPKQGPKSIKGKKGRKGKPPKSPKPLGEDEEVSLQKSLKF
NIDGVNDSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSPSASQKHQAVQELPATN
TFVGTERDDNSTGSDQYSDYSYKTSQPKYSTKSLPHRRVTFSTANPMQDAQDSSQQSYYD
SGLEESETPSSKSSSGPRLGPLALPEEHYERTTPDGSIGEMEHPENDVRSLPDVAMTGTC
SQECSELGHSDACWMPGQPSPARKARTLPKLSTFVPYQERGGTLGRLANGEPRPRLPPSR
SAYAPSDHAPSDHVPMEEVPLSVTSEFPPTSPTSNHAPKREIYL
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggacttctcagtgggattgtatctgctatgggcattagtgttgaactttgggcgtggc
acactgggcggcatcctgtaccgtgtgcgtgaagagcagccgccaagcaccctgataggc
agtctggcagctgatcagggcttacctgactctgggcatctgtacaagttggaggtgggc
accccttacctgcgggtggacggcaaaacaggtgaaatattcaccactgagatccccata
gacagagagactctgaaggattgtcgcatgaaaggaaagccatgctttctggagtttgag
gtgtctgtcacggatctcatccagaaccaaagcccccggctgattgagggacggattgag
gtgcttgacatcaatgataacacgccgcagtttccctcacccgtgctcacgctctctgtg
caggagaacactcatatgggagccactttctccatcccactggctactgacaaagataca
gagcgtaatggtgtagctgactacaccctctctgctggaccagaggctgttgcactcttt
ggcctacaagtggcagatgacaggggtgagaaattgcctcagctcattgtgatgggaaac
ctggacagggagtttaaagactcctatgacctaaccatcaaagtagtagatgggggaagc
ccacctcgctacagtagtgccttgctgagagtcgtcgtcacagatgccaatgacaacgca
cccaagtttgagaaatcatcctatgaagcagaggtttcagaaaacagtcctgttggacac
tctgtattacaggtcaaggccaatgactcagatctgggtccaaatggcgaaattgaatac
atcattcatcaagccagtgatccagtgccaaagctgctacagattgaccgatctacgggc
atcatatatgtaaaaggcccgttggatcgtgaggagctcaacagcttgaaatttcacgtt
attgcacgggacagaggtccgtcacctaaaagctcaacaacatacattactgttgaggta
actgaccagaatgataatgcaccagctgtggagatccgtggaatcggtcttaggacccat
agtgatggggtggcaaatatctcagaagacatgccagtgggcactgcggtggcactggtg
caagtgtcagataaggatgagggagagaatgctgtggtgacatgtgtggtggcaggagat
gttccattccagctccgaccagctggagattcctctgttgataacaagaagaagtacttt
ctgcagaccaccacacctctggactttgagcgagtcagggactatcgggtggagatagta
gctgtggactcaggcaacccagctctgtccagcaccaactccctgaaagttcaagtgact
gatattaatgacaattctcccatattctcacccccagtgtttgaaatagagttttctgaa
gagaaccagcccggagagaaggttcttgatgtcattgccgtagatgcggacagtggcacc
aatgcagaactcatctacagtattgttgcagactcctcgacaaaggggctctttgaaatt
gacccaaacacaggtgaagtacgagcgaggagcccacttgaccgtgagcacaaagaacgc
tacgagttccgtgttacagcagccgacaaaggtgttcctagccacaggggtactgctact
gttgtgatcaaagtactggataggaatgataatgatcccaagtttatgcttagtagctac
agcttctctgtcttggagaacatgccaccactcagcccggttggcatggtgactgtatta
gatatggacaagggagaaaattcccaagtgcaactttctgttgaaccagatgttggaaag
tttgtagtacagaatggcacaggaacaatcctatcaagtatatcttttgaccgggagaaa
gaaagcagctacagtttccgactcaaagcagtagatggaggagaaccccccaggtcatct
tatgttggtgtgaccatcaatgtacttgatgagaatgacaatgcaccagttgttaccaaa
ccttccaattcatctttcacacgtctgtctcccctggctgcacctgatagtgttgttgag
gtggtggaggcagaagacatcgactctggctcaaatgctgagctggtgtatagtattgct
ggggggaacccccatgagctcttctatatatctccctctgatggagagatcaaactaacg
aaggaactgactcggaaacatggaggtctgcatcgcttggtggttaaagtaagtgatagg
ggtaagccttctcgccatgccattgccttggtgcacatttatgtcaatgagaccatttcc
aacatcagcctagtggagggtctagtgggacatagcttatacactccactggacacagac
attgcgggtgaccctgactatggtctagctgctcagagaagcaatatcctctatggtagt
ttggctggtgtggcaggagttgtcacagtaatcctcgtggtcgtcttcatcaggcatcgc
ctacagagagaaaccaagagcggctatcaggctggcaaaaaggagaccaaggacttgtat
gcacccaaacaaggaccaaagagcattaagggtaaaaagggaagaaagggaaagcctccc
aaatcacccaaacctcttggagaagatgaagaggtcagcctccaaaagagtctgaagttc
aacattgatggggttaatgacagcccaaggatccacctgcccttgacctacccacctggc
agccctgacttgggcaggcattaccgttcaaattcacccttgccctccattcagcttcag
gcccagtctccgtctgcttcccagaagcatcaggctgtccaggagctccctgccaccaat
accttcgtaggaacagaacgagatgacaactctactggctctgaccagtactcggattac
agctacaagaccagtcagccaaaatacagcacaaaatcgctgccgcaccgtagagtgacg
ttctccacggccaatccgatgcaggacgctcaggactcgtcccagcagagctactatgac
agcggcctggaggagtcggagacacccagcagcaagagctcgtcagggccacgcctcggc
ccgctggcactgcctgaggagcactatgagagaaccacgcccgacggcagcatcggagag
atggagcaccctgagaatgatgttcggtcgcttcctgacgtggccatgacggggacctgc
agtcaggagtgcagtgagctcggccactcggacgcctgctggatgcccggtcagccttca
cccgcccgcaaagcacgcacgctgcccaaactctccaccttcgtgccttaccaggagaga
ggcgggaccctgggacgactggccaacggcgagcctcggccccgcctcccgccctcacgc
agtgcctacgcccccagcgaccacgcccccagcgaccacgtcccgatggaggaggtgcct
ctgagcgtcacctccgagttcccgcccaccagtcccacttctaaccacgcccccaaacgg
gaaatatacctgtga
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