Neoarius graeffei (lesser salmon catfish): 132873857
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Entry
132873857 CDS
T10798
Symbol
smg8
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132873857 (smg8)
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
132873857 (smg8)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
DUF2794
Motif
Other DBs
NCBI-GeneID:
132873857
NCBI-ProteinID:
XP_060765649
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All DBs
Position
25:complement(22615162..22633629)
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AA seq
920 aa
AA seq
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MFQTAMALPVNINALLQSEVIEDSFYKDEGVCILGIFGKSAVQTGCAKESLINILSDKHV
FSVFGTDEPDNLNERSLIKTYYSQENRVLYLVLTSIFDNRQLLRACDSLSSGLSHAEEHE
FWKGAEKDHCLQLLYLFSLCHILLLIHPTCSFDVTYDRLFRALDALRQKTLPLLRGAIKD
CPVSKEWKMNCRPCPPRLLFVFQMNGALRIGSSGLAGNGNEGTGVDKPKKHSPRRRLQHA
LEDQIYRIFRKSRVLTNQSSNCLFTVPANQAFVYVVPGPEEDPIGSLLGQLRANCALREC
DPGTPAPGQRRYQQMRHSNRHLSFIMENSGLSSSGGQLVDCTLKEFLWQHVELVLSKKGF
DDSVGRNPQPSHFELPTYSKWTCVASRLYQVMMENSEDDTAELFLKMQGQLKVLEGFLDA
DAKFSENRCQKALPLAHSAYQSNLPHNYTTTVHKNQLAQALRVYSQHARGVAFQHYALQL
HEDCYKFWSNGHQLCEERSLTDQHCVHKFHLLPKPGEKPEVDHNPPILYHNSRGRSTSSC
NCGRKQAPREDPFDIQTANYDFYLMLEEKCCGKLERINFPVFQSSTSDPAPACDDATRPP
EAPVSDAERLKEKESVTHTPGDSTSLSLALSLGQSTDSLGAYADGAEGHEKRPSVDRQAS
TVEYLPGMLHSGCPKGLLPKFSSWSLVKLGPAKSYNTLVGLEQPGFLPGSAFLLPWDLVI
RSRSEDDASSTDLDGSTSSWPAPNKVPAGKRGTVGIGRGRRRDDVSRVYVGFEYEDSRGR
RFLSSGPDKVVKVLGQGGPKEPATRALNSDMPLYIPSPAQGRGIKPHYAQLARLFVVVPD
GPIEIILSPQVQPGPPPCPIFHPEQPEVVLPPDGLWVLRFPYAYVTDSGPCYPPKENQPL
ASFRVLKGILRANTACSPAQ
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgtttcagacagcaatggcgctgcctgtgaatattaatgcacttttacagtcagaggtg
atagaggattccttttacaaagatgaaggcgtatgtatattgggtatatttgggaaaagt
gctgtgcaaactggatgtgctaaggagtctcttataaacatcttgtctgataaacatgtc
ttttccgtgtttgggaccgacgagccggataatctgaatgaacggagcttgatcaagacg
tattatagccaggaaaatcgtgtgttgtatttggtgctgacttccattttcgataatcgc
cagcttctccgggcatgtgattctttatcttcgggtctaagtcacgccgaagagcacgaa
ttttggaaaggagctgagaaggatcactgccttcagctgctctatcttttctcattatgc
cacattctgctgttaattcatcccacctgctccttcgatgtcacttatgacaggttgttc
cgcgccttggacgcactgcgccagaaaactttacctttactccgtggtgctataaaggat
tgccctgtgtcaaaggaatggaagatgaactgtcggccctgtcctcctcgtctgctgttt
gtgttccagatgaacggggctctcaggatcggttcatctggacttgctggaaatggcaat
gagggcacaggagtagacaaacctaagaaacactccccgaggcggcgtctgcaacatgca
ttagaagatcagatctaccgaatattccgtaagagcagagtccttaccaaccagagcagc
aactgtctgttcactgtgcctgcgaaccaggcttttgtctacgtggttccaggaccagag
gaggatccgattggttccctgcttgggcagttgcgggcaaactgtgcactgcgtgagtgt
gaccctggcacacctgcccctgggcaaaggcgataccaacagatgcgccactcgaacagg
catctctcatttattatggagaatagtggtctctcttcgtcaggaggtcagttagtggac
tgtactctgaaagagtttctttggcagcatgtagaacttgtgctaagcaagaaaggcttc
gatgacagtgtgggccgaaacccacagccatctcacttcgagttacctacctactccaaa
tggacttgcgttgcctccaggctataccaagttatgatggagaacagtgaagacgacaca
gcagaacttttccttaaaatgcagggtcagctcaaggttctcgaaggcttcctggatgca
gatgcaaaattttcagaaaacaggtgtcagaaagcattgccactggctcacagcgcatat
caatccaatctgccacacaactacactactacagtgcataagaaccagctagctcaggca
ctccgggtctacagtcagcatgccaggggagtagccttccagcactatgccttacaactt
catgaggattgctacaagttctggagtaatggacaccagctgtgtgaagaacgtagcctc
actgatcagcactgtgtgcacaagtttcacctgctgcccaaaccaggagagaagcctgaa
gtggatcacaaccctcctattctctatcacaacagcagagggcgctcaacaagttcctgt
aattgcggcaggaagcaagcccctcgagaagacccatttgacatccagactgccaactac
gacttctatttaatgcttgaggagaagtgctgtggtaaactggagaggatcaatttcccc
gtgttccaatccagcacttcagacccagcacctgcctgtgacgatgcaaccagacctcca
gaagcaccagtgtctgatgctgaacgtctcaaagaaaaagagagtgtgacacatacgcct
ggagatagcacaagtctaagcctcgctctcagtcttggccaatccactgacagcctaggt
gcttatgctgatggagccgagggccatgagaagaggccaagtgttgacagacaagcctcc
actgtggagtatctacctggcatgctccactctggatgtcctaaagggcttcttcctaaa
ttctctagctggtcactggtcaaacttgggccagctaagtcttataacacccttgtgggt
ttggagcagcctggcttcctgcctggctcagcatttcttctgccatgggacttggtgatc
cgaagccgctcggaggatgatgctagctccacagatcttgacggcagcacctcatcttgg
ccagctcccaataaagtgcctgctggaaaacggggcactgttggaattggacgtggccga
agacgtgatgatgtctcacgtgtgtatgtgggttttgagtacgaggacagcaggggtcgc
cgtttccttagctctggtccagataaagtagtaaaagtacttggacagggagggcccaag
gagccagctactcgagctctgaattctgatatgccactgtacattccatctcctgcccag
ggcagaggaatcaagcctcactatgctcagctggctcgcctctttgttgtggttcctgat
ggaccaattgagattatactcagcccacaggttcaaccagggccgcctccttgtcccatt
ttccatcctgagcagccagaagttgtgctgccccctgatggactgtgggtgctacgattt
ccctatgcctacgtgacagacagtggaccatgctatcctccaaaagagaatcaaccactg
gccagcttccgggttctcaagggcattttgcgtgcaaatactgcttgttctcctgcacag
tga
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