Neoarius graeffei (lesser salmon catfish): 132874645
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Entry
132874645 CDS
T10798
Symbol
pbrm1
Name
(RefSeq) protein polybromo-1 isoform X1
KO
K11757
protein polybromo-1
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132874645 (pbrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngra03021
]
132874645 (pbrm1)
03036 Chromosome and associated proteins [BR:
ngra03036
]
132874645 (pbrm1)
Transcription machinery [BR:
ngra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
132874645 (pbrm1)
Chromosome and associated proteins [BR:
ngra03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
132874645 (pbrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
132874645
NCBI-ProteinID:
XP_060766959
LinkDB
All DBs
Position
26:48533523..48572560
Genome browser
AA seq
1646 aa
AA seq
DB search
MGSKRRRATSPSSSVSGGDFEDSQPAPTSSSSRKRRRTANIPTVDPIAVCHELYNTIRDY
KDDQGRMLCELFIRAPKRRNQPDYYDVVSQPIDMMKIQQKLKMEEYDDVEQLTLDFQLLF
NNTKTYYKPETPEYRAACKLWDLYIRTKNEFVQRGDYDEDDDDGDDARETPGSAMEDEAA
ASLKEVLEQLLDTVLRHNEHGRLISELFQRLPSKIQYPDYYAIIKEPIDLKAIAQRIQIG
YYKSVNHMFKDIDLLVKNAKTYNEPGSQVFKDANTIKKIFSQRKLELEHMEPIKSSIRIK
NRKSVHGDRLSSITMALQYGSESDEDGILTGSVHYDEGESEAESIHSNMDMSNPIFQMYE
AIRGGRNSQGQLIAEPFLQLPSRKDYPDYYQQISQPISLQQIRDKMKNNEYESVEQMDAD
LNMMFENAKRYNVATSHIYKRALKLQHILQLKRKELGRREDEDGDSMLSSTLSDGSTTKR
KSYKKNTKKNRLKSLYQAVIEARELGTGRRLCDLFMVKPSKKDYPDYYKIILEPMDLRTI
DHNIRADRYTNEDVMVEDMKLMFRNARHYNEEGSQVYNDANTLEKIMKEKKRELGPAPED
DDIISPKLKIRKSGISPKKSKYLTPLQQKLNELYEAVKNYTDKRGRRLSTIFLRLPSRAE
LPDYYLAIKRPIDMERVKSHMLANKYQDVDALVEDLVLMFNNACTYNEPESLIYKDALVL
HKVLLETRRDLEGGDDSSVPDVPRLIQDLIRSLFVSVLGHQDDEGRCYSDSLAEVAAEDP
ANPDRPRLNFEIIRANVEKGRYKRLDVFQDHMFEVLEKARRMHRTDSEIFEDAVELQHFF
IRIRDELCKNGEILLTPALSYTSKHLHSDVEKEKKEKLPKEFEEDKIKREEEKKEAEKSE
ESSTGTWQGSLQRTYSQDCSFRDRMYHVGDYVYVEPAEANLQPHIVCIERLWQDDTGEKW
LYGCWFYRPNETFHLATRKFLEKEVFKSDYYNKIPVNKILGKCVVMFVKEYFKLSPEGFR
PEDVFVCESRYSAKTKSFKKIKMWTMPLSSVKFVPRDVPLPVVRVASMFAPKPESEKAAE
PTEDNKIVALVIDKEREDVPVEMSNGEPGCQYYDQLCYNDMWLKVGDCVYIRSHGLVRHR
VGRIEKMWVRDGAAYFFGPIFIYPEETEHEPTKMFYKKEVFLSNLEESCPMTCITGKCTV
SSFKDYLSCRPTEVPEDDVLLCESRYIESEKQMKKFKGLKRFSLSAKVVEDEIYYFRKLI
VPQKEPSPLLDKKIEELEAKFADMTDEELEDLGDDDGDGLDGQGMSQLQTQLHSDLDMLS
YTPIQSTPKSFKGLSKKEGAKRKINMSGYILFSSEMRAVIKAQHPDFSFGELSRLVGTEW
RNLESAKKAEYEERAAKVAEQQERERAAQQQNSPRAGTPVGALMGVVPPPSPMGMLNHSM
TPMAGMMGRIFQPPMLPLRDPVDCIVSMAGMPLHFLPVLHRHHPPGMCGFPGMLYPGMNG
MGSGSTGNHYGSQVKDNKTGMIGGNQQAPPPYPGQGQVGQPSLQQPSTPIFVAPPPKPQR
LLHSEAYLRYIEGLNAESSTVSKWDQTLSARRKDVRLTKEQESRLPSHWLKSKGAHTTMA
DALWRLRDLMLRDTLNIRQTYNIQNI
NT seq
4941 nt
NT seq
+upstream
nt +downstream
nt
atgggctctaagcggaggagggccacctccccgtccagcagcgtgagcggtggagacttt
gaagacagccagccggcgccgacctcctcgtccagccgcaagagaagaagaacagcgaac
attcctacggttgatcctattgcagtgtgtcatgaactttacaacaccatcagagactat
aaggatgaccagggcaggatgttgtgtgaactctttatcagagcaccaaaaagaaggaac
cagcctgattactatgacgtggtgtctcagcccattgacatgatgaagatccagcagaag
ctgaaaatggaggagtacgatgacgtggagcagctcaccctcgatttccagctcctcttt
aacaacactaagacctactacaaacctgaaaccccagagtaccgagctgcatgtaaatta
tgggacctttacattcgcaccaagaatgagtttgtgcagcgaggagactatgatgaagat
gatgatgacggtgatgatgcacgagaaactccaggaagcgccatggaggatgaggctgca
gccagtcttaaggaggttttggagcagctgctggacacagtgttgagacacaacgaacac
ggacgcctcatcagcgaactcttccagagacttccttctaaaatacaatatccggattat
tacgccattatcaaagagccaatagatctcaaggccattgcacaaaggatacagatcggc
tactataaaagtgtgaatcatatgttcaaagacatcgacctgctcgtcaaaaatgctaaa
acatacaatgagcctggttcacaggtgttcaaggacgcaaacacgatcaaaaagatcttt
tcccagaggaagctggagctcgagcacatggagccgataaaaagcagcatccggatcaag
aacagaaaatctgtgcatggagacagactctcttcaattaccatggctttacagtatggc
tcagagagcgatgaagacggcatcctcacaggctcggtgcattatgatgagggcgaatca
gaggctgagagcatccactccaacatggacatgtctaatcccatcttccagatgtacgag
gctatacgaggaggcaggaacagtcaagggcagctcatagctgagccttttcttcagctg
ccttccaggaaggactatccagactactaccagcagattagccagcccatctccctccag
cagattcgtgataagatgaagaataatgaatacgagagtgttgagcagatggacgctgat
ctgaacatgatgtttgaaaacgcaaagcgctacaatgttgccacctcccatatctacaaa
cgggctctgaaactacagcacattcttcagctgaaaaggaaagagctaggaaggagagaa
gatgaggatggtgacagtatgctgtcctccactctgtcagatggcagcactaccaaacgc
aaaagttacaaaaagaacacgaagaagaaccgtttgaagtctctgtaccaggccgtgatt
gaggcgcgagagctggggaccggtcgtagactctgtgacttattcatggttaaaccttca
aagaaagactatccagattattataagatcatactggagcccatggacctgcgcactata
gaccacaacatccgcgcagacagatacaccaacgaggatgtcatggtggaggacatgaag
ctgatgttccgcaatgcgagacactacaatgaagagggctcacaggtgtataatgatgca
aacactctggaaaagattatgaaggagaaaaagcgagaactcgggcctgcgccagaagac
gatgacatcatctcaccaaaactcaaaataagaaagagtggcatctccccaaagaagtcc
aaatacctgacgcctctgcagcagaagctgaatgagctctatgaggcggtgaagaactac
acagacaagcgaggccgtcgcctcagcaccatcttcctgcgcctgccgtcccgagctgag
ctcccagactactacctggccatcaagaggcctatagacatggagcgagtcaaaagccac
atgctggccaacaagtaccaggacgtagacgctctagtggaggaccttgtgctgatgttt
aacaatgcgtgtacctataacgagcctgagtcactcatctacaaagatgctctggtgctt
cacaaggtccttctggagaccaggagggacttggaaggaggcgacgactccagcgttcct
gacgtacctcgcctcatccaggatctgattcgcagcctgttcgtttcggttctgggtcac
caggatgacgaaggtcgttgctatagcgactcgctggccgaggtcgcagccgaggacccg
gccaatcccgacaggcctcggctgaactttgagatcatacgggctaacgttgaaaaaggg
cgctacaagaggctggatgtcttccaggaccacatgtttgaagtcctagagaaggccaga
agaatgcataggacggactctgagatctttgaggacgcggtggagctgcagcacttcttc
atccggatcagagatgaactgtgtaagaacggagagatcctgctcaccccagcactcagc
tacacctccaaacacctgcacagtgatgtggagaaggagaagaaagagaagctgcccaaa
gagtttgaggaagacaagatcaaaagggaggaggagaaaaaagaagcagagaaaagtgaa
gaatcatctacggggacgtggcagggaagcctccagcgcacctacagtcaggactgcagt
ttccgtgacagaatgtatcacgtaggggactatgtctacgtcgagcctgctgaggcgaac
ctccagcctcacatcgtctgtatcgagcgcctctggcaggacgacacaggagagaagtgg
ctttatggctgctggttttacagacccaacgagactttccatctcgccacacgcaaattt
ctggagaaggaagtctttaaaagtgactactacaacaaaattcccgttaacaaaattctg
ggcaaatgtgttgtcatgtttgttaaggaatatttcaagctcagccccgaaggctttcga
cccgaggacgtgtttgtctgtgagtcccgttactcggccaaaaccaagtcgttcaaaaag
atcaagatgtggaccatgcctctgagttcggtcaagtttgtccctcgtgacgtgccgttg
ccagtggtccgggtggcctccatgtttgctccgaaaccagaaagcgagaaagctgccgag
ccgacagaggacaacaaaattgtagccttggttatcgataaggagagggaggacgttcct
gtggagatgagcaacggtgagccaggctgtcagtattacgatcagctctgctacaacgac
atgtggcttaaagtaggagactgcgtctacatccgctctcacggcctagtgcgccaccgt
gtgggcagaattgagaaaatgtgggtgcgggacggggccgcctactttttcgggcccatc
ttcatctatcccgaggagacagaacacgaacctaccaagatgttctataaaaaggaggtg
tttctaagcaatctggaggagtcatgccccatgacctgcattactgggaagtgcacagtg
tcctcgtttaaagactacttgtcgtgccgtccgaccgaagtgcctgaagatgacgtgttg
ctgtgtgagagtcgctacattgagagtgagaagcagatgaagaagtttaaagggctgaag
cgattctccctctctgccaaagtagtggaggatgaaatctattattttaggaagctgatc
gtgcctcagaaggaaccgtctccattgctggacaagaagattgaggagctggaggccaag
tttgctgacatgacagacgaagagctggaagacctgggcgatgacgacggggacggcttg
gacggccagggaatgtctcagctccagacgcagctacacagcgatctggacatgttgtcc
tacacaccgatacagtcgacaccaaaatcctttaagggtctgtcgaagaaggagggcgca
aagaggaagatcaacatgagcgggtacatcctgttcagcagcgagatgcgggcggtgatc
aaggcccagcacccagacttctctttcggtgagctgagccgtctcgtaggcaccgagtgg
agaaatctggagtcggccaagaaagcggagtatgaagaaagggccgccaaagtggcggag
cagcaggagcgtgagagagcggctcagcagcagaactcgccgagagcaggtaccccggta
ggggcgctcatgggggtggtaccccctccgagccctatggggatgcttaaccacagcatg
acgcctatggcaggcatgatgggtcgcatttttcagccacccatgctgccgctgcgagat
ccagttgattgcattgttagcatggctggcatgccgctgcatttcctgcctgtcttacac
cgccatcacccgccaggcatgtgtggcttccctggcatgctgtacccgggtatgaatgga
atgggctctggatctacaggaaaccactatggatcccaggtaaaggataacaagacaggc
atgattggtggcaatcaacaggccccgcccccttacccaggacaaggacaggtgggccag
ccctccctccagcagccctccaccccgatattcgtggctcctccaccgaaaccacaacgg
ctcctccactctgaggcctacctcaggtacatagaggggctcaacgcagagtcgtctacc
gtcagcaaatgggaccagacattgtcagcccgaaggaaagacgtacgcctcacaaaagaa
caggagagcagacttccatctcactggctaaagagcaaaggggcacacacgaccatggcc
gacgccctgtggcgcctgagagacctcatgttaagagacacactaaacatcagacaaaca
tacaacatccagaacatctaa
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integrated database retrieval system
